Spav010298.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2513769-2519478[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5e-05 0.0028 18.3 0.8 2 23 183 204 182 204 0.95 2 15 2.6 1.4e+02 3.5 0.0 6 23 254 272 252 272 0.91 3 15 0.32 18 6.3 6.2 2 20 287 305 287 307 0.95 4 15 0.00015 0.008 16.9 1.8 1 23 319 342 319 342 0.98 5 15 0.089 4.9 8.1 2.3 5 23 352 371 350 371 0.95 6 15 3.6e-05 0.002 18.8 0.3 1 23 378 401 378 401 0.98 7 15 0.019 1.1 10.2 3.1 6 23 412 430 410 430 0.95 8 15 0.0002 0.011 16.4 1.6 1 23 438 461 438 461 0.98 9 15 0.065 3.6 8.5 0.9 5 23 471 490 469 490 0.90 10 15 7.5e-05 0.0041 17.8 1.0 1 23 499 522 499 522 0.98 11 15 0.00014 0.0079 16.9 2.7 5 23 532 551 530 551 0.95 12 15 0.088 4.8 8.1 1.7 2 23 564 586 563 586 0.94 13 15 0.039 2.1 9.2 1.4 6 23 597 615 595 615 0.95 14 15 0.00014 0.0075 16.9 2.7 1 23 627 650 627 650 0.98 15 15 0.051 2.8 8.9 1.9 6 23 661 679 659 679 0.93
Sequence Information
- Coding Sequence
- ATGAAAGTTGAAATTGAAACAAATGGCACTATGGATAGCAAGGAACATTTAGGACCCAGCTGTGAAACATTGAGTACCCCAGCCCCAGAGGCACAGAGCAGTCAATATATTATGTGTATGCCAACATTGAAAATAGACATTAAAGAAGAAACAACAGCAGAGTTCAGAGATGAGGAAAAACCACCTTGCAGTGACTATATGTATTCATATAAGCCATTAGAACCGTCAAAGTATGTAAATTATTATGATACTAAAGATTACGTGTTTGAACTGAAGAAGGAATTCCCTGAGGATGAATGCCCTCAATCAGACTGCATTATGAACAGAAAAATAGTTTCTGGAAATACGGAATTATTAACACTTATTAACAAACAAAATGTTAAAAATGAAAACGTAGAGGAGGAATTGTCATTTAAGAAGGAAGAAAATGATTATAAACCGTATCAGCTTACCTTAAATACTAAGAGGCTAAAAGAACAAGATATTTGGTATAATGCTGAAGGGACTAGCATACATTATGATGTCCTGGTAACTCCTGAAGAAGTTCAATGCAAGTTGTGTGGTAGAATATTCAAAGACAGTTTCAATTTATTAAAGCACAATAATGAACACATAAAAATTTATATAAACACACCAAGGGATAAAAATATAAATGAGTTAAACCAGTACCAATATCGCGACAAGGCTTGTAATAATCATGATAATATGCTTGCACAAGTTAGTGATGTTCACAGCAATGAACAACCCAAGGTTGGATTATGCGAAAAGCAATCCAAGAACGTATCGAATCTTATAGGACATCTTCTGCTTTTGCACAAAATTAAGAAGTCTCTAAATCAGGTGACTCAAAATGGTGAGAAGTGTGAATTTTGTAATGTCAATTGCAAACACAAAAAAGCATTGTGTAAACATATGGAGTTGTCTCGTACTAGTAAGGGTGAAGAGGAAAAGAGATATAAATGTGACTCATGCGAGCGCATTTATAAAAATAAAAATAGTTTAACGTTGCATATAAAAAGATCTCATTATGATTATGGGAGAATGTTCAAATGTTGGTGCGGGAAACAGTGCCCTTCACCGATACACTTGCGTGAACATAAGAAAACACAACATGATACAGATAGCAAAATATACAAATGTAAAATCTGCGAGGCGGTCTACAACGCGAAATCGAGTTTAAAAGACCATATGAAGATAATGCATTATGATTACGGGAGAATGTTTGAATGTTCGTGCGGGAAACAGTTCCGTACACCGATACACTTACGCCAACATAAGAGTAGGCAGCATAATAGCAAATTTAAAGGTCAATTCCAATGTGACTATTGCCAGAAAGTCTTGACGACAAAAAAATATGTAGCGACGCATATAAAAAAAATGCATAGTGGTCATGCAAAGATATTTCAATGTTGGTGCGGGGAACAGTTCCGTACGCCGATACACTTGACCGAACACAAGAGTTTGCGACATAGTTCTAATAGGGAAAATGAGTTATTCAAATGTAAATACTGCGAGGTGGTATATAAAGCGAAAAAGAATTTAGCAATGCATATGAAGAGAGTTCATTATGATTATGGGATAACGTTTAAATGTTGGTGCGGGAAACAGTTTCGTACACCGATACATTTACGTCAGCATATGAGGCGGCAGCATGATGTCAGAATGAAAGATACAAATAACGACAAAGTTCAATGTGACACTTGCCACAAAAGTTTCCTAACCAAGCGCATTTTATTAAAACATATAGAAAGAGTTCATTATGATTATGGTAAAGTGTTTGAATGTTGGTGCGGGAAACAGTATCGTTCACCGATTCACCTATCTGATCATAGGAACAAGCAGCATGGCGACAAAATGAAAGATACAAAAAATGACAAATTCCAATGTGACTATTGCCACAAAATTTTCAAAACTAGAAATATTTTAGTAAGACATATAAAAAGTATTCATTATGATTATGGTAAAGTGTTTGAATGCTTGTGTGGGAAACAGTTCCGTTCACCGATTCACCTATCAGATCATAAGAGTCGGCAGCATAGTAGCAACATTAAAGATACAAATAATGACAAACTCAATATGACTCATGCCTCAAACATTTCATTACCATACAAGATATTTTAG
- Protein Sequence
- MKVEIETNGTMDSKEHLGPSCETLSTPAPEAQSSQYIMCMPTLKIDIKEETTAEFRDEEKPPCSDYMYSYKPLEPSKYVNYYDTKDYVFELKKEFPEDECPQSDCIMNRKIVSGNTELLTLINKQNVKNENVEEELSFKKEENDYKPYQLTLNTKRLKEQDIWYNAEGTSIHYDVLVTPEEVQCKLCGRIFKDSFNLLKHNNEHIKIYINTPRDKNINELNQYQYRDKACNNHDNMLAQVSDVHSNEQPKVGLCEKQSKNVSNLIGHLLLLHKIKKSLNQVTQNGEKCEFCNVNCKHKKALCKHMELSRTSKGEEEKRYKCDSCERIYKNKNSLTLHIKRSHYDYGRMFKCWCGKQCPSPIHLREHKKTQHDTDSKIYKCKICEAVYNAKSSLKDHMKIMHYDYGRMFECSCGKQFRTPIHLRQHKSRQHNSKFKGQFQCDYCQKVLTTKKYVATHIKKMHSGHAKIFQCWCGEQFRTPIHLTEHKSLRHSSNRENELFKCKYCEVVYKAKKNLAMHMKRVHYDYGITFKCWCGKQFRTPIHLRQHMRRQHDVRMKDTNNDKVQCDTCHKSFLTKRILLKHIERVHYDYGKVFECWCGKQYRSPIHLSDHRNKQHGDKMKDTKNDKFQCDYCHKIFKTRNILVRHIKSIHYDYGKVFECLCGKQFRSPIHLSDHKSRQHSSNIKDTNNDKLNMTHASNISLPYKIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -