Spav010305.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2632421-2636436[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.2e-05 0.0023 18.6 1.8 2 23 168 189 167 189 0.95 2 11 9.3e-06 0.00051 20.6 0.3 1 23 234 257 234 257 0.94 3 11 0.0011 0.059 14.1 0.2 1 23 286 309 286 309 0.98 4 11 0.0075 0.41 11.5 3.2 6 23 320 338 318 338 0.94 5 11 6.2e-05 0.0034 18.0 4.2 1 23 348 371 348 371 0.98 6 11 0.02 1.1 10.1 1.8 6 23 382 400 380 400 0.92 7 11 0.00012 0.0068 17.1 5.1 1 23 410 433 410 433 0.97 8 11 0.018 0.98 10.3 2.8 5 23 443 462 436 462 0.88 9 11 1.4e-06 7.7e-05 23.2 2.4 1 23 472 495 472 495 0.98 10 11 0.0011 0.063 14.0 3.4 6 23 506 523 504 524 0.93 11 11 0.0079 0.44 11.4 1.6 1 23 536 559 536 559 0.98
Sequence Information
- Coding Sequence
- ATGTATAACAGCGGACATCTGGTACCTAGCTGTGATACATTGAGTACTACAGCTACTGAGCTACAATGGAACCTGCACATATCCATACCAACACTGAAACAAGAAACAGTAGAATGTATAGACAAGCAAGAATGCTCTCACAGTGGCTCCAAGTATCTCGAGTCCTTGGAGTCATCAGAATATATAAATCAATATGACAATAAAGATTATGTGTTGGAACAAATAAAGCAGGAAATTTCTGAGAACCAACCTCCTCAATCAGGTGGAGGTATGAAATGTGAAATAGTTTTTGAAGATGCAGAATCATTAAAACTTGTAAATAATCAAGAAATAGAAAGTATAAAAAGAGAAGAGGATTTATTTTTCAATATGAAGGTAGAAAACAAAGATAATGAGTATCCGTTTGCATTAAAATTGGAGACACCTGCAGAGCAAGGAATATTGGATAATGTTGAAGAAACTACCGTACATTATGATATCCTTGTAAATCCTCAAGTAGTGAAATGCAAGTTGTGTGGTAGAATTTTCAAAAATAATTTCAATTTATTTAAGCACAATAATGAACATATAAAAATTGATATAAACACACCAAAAAATAATGAAATGAATCAGTCACACCAGTACCGATACGGCGAAAAAGGTTTCAATAATCATGACAGTATGCTTACACACGTCAGTGTTGTTCACAGCGAGACAACATTCAGTTGTGAAATTTGTGGAAAGCAATTTAAACAAATTCAAAATCTTAAACAACATGTCGATATTTTACATGCATTTAAAACACCTTCAAATGGTGATTTCAAAGGCAAGAATAATCGGAATGTCCATATTAGAACACGTTGTAAAGGGAAAAAATACAAATGTGATGCTTGCGAAGCGGTTTTCAGAAGCAGCCTATTGTTAACATTGCATATAAAGAGGATGCATTATGATTATGGGCGGTTGTTCGATTGCTGGTGCGGGAAACAGTTCCGTACGCCGAAGCATTTGAGTAACCATAAATATACGAAGCACGGTCGCGGATTTGAAACCGATGGGAAGTACCAATGTGACGTGTGCAAGAAGGATTTTAAAAGGAAACATAGTTTATTATATCACGTAAAGAGACTTCATTATGACTATGGTAGAAAGTTCGATTGCTGGTGCGGGAAACAGTTTCGTTCGCCAATGCATTTGAGTAACCATAAGTACATGATGCACGTTCGCGTATTTGAAACCGATGGGAAATACCAGTGTGACGTGTGCGAGAAGGTTTTTAAAAGGAAACACAATTTATCATGTCATATAAAGAGAATACATTATGACTATTGTGGAACTTTCGATTGTTGGTGCGGGAAACAGTTCCGTTCGCCTATACATTTGAGTAATCATAAATACACGAGGCACGGTGGTGGGGTGAAAACCGATGGGAAATACCAATGTGACGTGTGCAAGAAGGTTTTTAAGAGTAAACGGTATTTATCAAATCATATAAAGAGACTCCATTATGATTATGGGAGAAAGTTCGATTGTTGGTGCGGGAAACAGTTCCGAACGCCGGAACACTTGAAGGTACACAAGCGGGACCACCACGGTTGTATGACTAACAATGAAAATGAAAAGAAGTACAAATGTGAACGTTGCGAGTCTGTATTTAAATTGAAACGGTATTTAAGTATTCATGTTAAAAGGATGCATAGGTAA
- Protein Sequence
- MYNSGHLVPSCDTLSTTATELQWNLHISIPTLKQETVECIDKQECSHSGSKYLESLESSEYINQYDNKDYVLEQIKQEISENQPPQSGGGMKCEIVFEDAESLKLVNNQEIESIKREEDLFFNMKVENKDNEYPFALKLETPAEQGILDNVEETTVHYDILVNPQVVKCKLCGRIFKNNFNLFKHNNEHIKIDINTPKNNEMNQSHQYRYGEKGFNNHDSMLTHVSVVHSETTFSCEICGKQFKQIQNLKQHVDILHAFKTPSNGDFKGKNNRNVHIRTRCKGKKYKCDACEAVFRSSLLLTLHIKRMHYDYGRLFDCWCGKQFRTPKHLSNHKYTKHGRGFETDGKYQCDVCKKDFKRKHSLLYHVKRLHYDYGRKFDCWCGKQFRSPMHLSNHKYMMHVRVFETDGKYQCDVCEKVFKRKHNLSCHIKRIHYDYCGTFDCWCGKQFRSPIHLSNHKYTRHGGGVKTDGKYQCDVCKKVFKSKRYLSNHIKRLHYDYGRKFDCWCGKQFRTPEHLKVHKRDHHGCMTNNENEKKYKCERCESVFKLKRYLSIHVKRMHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -