Spav010291.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2428692-2434651[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.4e-05 0.0024 18.5 1.1 2 23 193 214 192 214 0.95 2 14 1.9 1e+02 3.9 0.0 5 19 256 270 255 271 0.94 3 14 0.0009 0.049 14.4 3.6 2 21 290 309 289 310 0.95 4 14 0.0053 0.29 11.9 3.3 1 23 322 345 322 345 0.97 5 14 0.0009 0.049 14.4 3.6 2 21 364 383 363 384 0.95 6 14 7.4e-05 0.004 17.8 1.9 1 23 396 419 396 419 0.97 7 14 0.0051 0.28 12.0 1.3 5 23 429 448 427 448 0.95 8 14 2.4e-05 0.0013 19.3 3.0 2 23 461 483 460 483 0.96 9 14 0.0066 0.36 11.7 0.3 5 23 493 512 490 512 0.95 10 14 2.7e-05 0.0015 19.1 0.6 1 23 519 542 519 542 0.98 11 14 5.5e-05 0.003 18.2 1.5 6 23 553 571 551 571 0.96 12 14 0.0097 0.54 11.1 0.3 5 23 581 600 579 600 0.95 13 14 0.00089 0.049 14.4 0.4 1 23 607 630 607 630 0.98 14 14 0.00034 0.018 15.7 2.5 6 23 641 659 639 659 0.97
Sequence Information
- Coding Sequence
- ATGAATAGCAAGGAACATCTAGCACCCAGCTGTGTTACATTGAGTACCACAGTTTTCAAGGCACCGTGGAATATACAGGTATCTCCACTAACAGTGAAACAAGAAGCAGTAGAATTCATAGATGGAGAAGAACCACCTTGCAATGAAGATATGTATCCATCTGAGCCCTTAGAGCAATCAAAGTTTGTGAATTACTGTGACAATAAGGAATATGCGTTGGAACAACTAAAGAAGGAATTCCCTGAGAATGATTGTCCTCAATCACATGTCAGTATGAGTAATAAAATAGTTATTAAATATCCATCTGAGCCCTTAGAGCCATCTAAGTTTGTTAATTACTACGACAGTAAGGAATATGCCTTGGAACAAGTGAAGAAGGAATTCCCTGAAGATGAATGTCCTCAATCACATAATATTACATTATTAAAACTTATCAAGGAACAAGAAATAATATATAATGCCATTGAAAAGTACCAGGATATAATAAAAACGGAGAGGTTAGAGGAGCAAGATATTTTGTATATTCCTGAAGCGACTAGCATACGTTATGATGTCCTGGTAACTCCTCGAGTAGTTCAATGCAAGTTGTGTGGTAGAATATTCAAGAACAGTTTCAATTTATTAAAGCACAATAATGAACATATAAAAGTTGAAATAAACACACCAGGAGACAATAAAATGATTGAGTTACACCAGTACCAATATAGCAACAATATACTTGCACAAATCAGAGATGTTCACAGCAAGAAAAAACGTAAAGTTGAATTATGCGGAAAGCAATTAAAGAGCGTTCGGAATCTTAAACAACACGGAGTTCTTTTACGCAAACTTAAGAAGTCTCCAAAACAAGTAACTCAAAATAGTGTGAAATGTAAATATTGCAATGCAAAGTACAAATATAAAAAATCATTGTGTAAACATATGAAGGTGTGTTGTGCCGCTAAGGAGAATGAGAAAATTATATATAAATGTGACTCCTGTAAGTGCTTATATACAAGTGAAAGCTATTTAAATAAGCATATAAAGCTAGTGCATTACGATTATGGGAGAACGGTACTGTCTCCAAAACAAGTAACTCAAAATAGCGTGAAATGTAAATATTGCAATGCAAAGTACAAATATAAAAAATCATTGTGTAAACATATGAAGGTGTGTTGTGCCGCTAAGGAGAATGAGAAAATTATATATAAATGTGACTCCTGTAAGCGCTTATATACAAGTAAAAGCTCTTTAAATAAGCATATAAAGCTAGTGCATTACGATTATGGGAGAACCTTTGAATGTTGGTGCGGGAAACAGCTTCGTACACCAGTCCACTTACGTTTGCATATGAAGCGGCAGCATGATGGCGAAATGAAAAGTAGTGATAACGACAAAATTCACTGTGACACTTGCCAAAAAGATTTCAAAACCAAATACTATTTAGAAAGGCACATAAAAAAAGTTCATTGTGATGATGGGACAACGTTTGAATGTTGGTGCGGAATACAGTTCCGTACGCCAGTGCTTTTGACTGAACACAAGAGAACACGACATGGTGCTAATAATGAAGTGTACAAATGTGAATACTGCAACGCGGTGTTTAACTTGAAACCTAGTTTAACAATGCATATGAAGAGAGTTCACTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGAAAACAGTTCCGTTCACCGGTACACTTAAAAAAGCATATAAAAACAATTCATTATGATTATGGGAGAACGTTTGAGTGTTGGTGCGGAATACAGTTCCGTACGCCAATGCTTTTGACTGAACACAAGAGAACACGACATGGTGCTAACAATGACGTGTACAAATGTGAATACTGCGAGGCGGTGTATAACGTGAAGAGCATTTTAACACAGCATATGAAGAGAGTTCATTATGATTATGGGAGGATGTTAGATTGTTCGTGCGGGAAACAGTTCCGTACCCCGATACACTTACGTGAACATATGAGGCGGCAGCATGGTTGCAAAATGATGGATAAAGCTCAACGTGACACTTAA
- Protein Sequence
- MNSKEHLAPSCVTLSTTVFKAPWNIQVSPLTVKQEAVEFIDGEEPPCNEDMYPSEPLEQSKFVNYCDNKEYALEQLKKEFPENDCPQSHVSMSNKIVIKYPSEPLEPSKFVNYYDSKEYALEQVKKEFPEDECPQSHNITLLKLIKEQEIIYNAIEKYQDIIKTERLEEQDILYIPEATSIRYDVLVTPRVVQCKLCGRIFKNSFNLLKHNNEHIKVEINTPGDNKMIELHQYQYSNNILAQIRDVHSKKKRKVELCGKQLKSVRNLKQHGVLLRKLKKSPKQVTQNSVKCKYCNAKYKYKKSLCKHMKVCCAAKENEKIIYKCDSCKCLYTSESYLNKHIKLVHYDYGRTVLSPKQVTQNSVKCKYCNAKYKYKKSLCKHMKVCCAAKENEKIIYKCDSCKRLYTSKSSLNKHIKLVHYDYGRTFECWCGKQLRTPVHLRLHMKRQHDGEMKSSDNDKIHCDTCQKDFKTKYYLERHIKKVHCDDGTTFECWCGIQFRTPVLLTEHKRTRHGANNEVYKCEYCNAVFNLKPSLTMHMKRVHYDYGRTFACWCGKQFRSPVHLKKHIKTIHYDYGRTFECWCGIQFRTPMLLTEHKRTRHGANNDVYKCEYCEAVYNVKSILTQHMKRVHYDYGRMLDCSCGKQFRTPIHLREHMRRQHGCKMMDKAQRDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -