Spav010212.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:1806542-1811846[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00021 0.012 16.4 1.6 2 23 177 198 176 198 0.94 2 19 7.7 4.3e+02 2.0 0.1 6 23 220 238 218 238 0.87 3 19 7.1 3.9e+02 2.1 0.0 4 20 243 259 243 261 0.91 4 19 0.0084 0.46 11.3 0.7 2 21 278 297 277 298 0.92 5 19 0.0003 0.016 15.9 2.8 1 23 310 333 310 333 0.98 6 19 0.052 2.9 8.8 0.4 6 23 344 362 342 362 0.90 7 19 0.006 0.33 11.8 3.5 1 23 371 394 371 394 0.98 8 19 0.11 6 7.8 0.9 6 23 399 417 397 417 0.90 9 19 2.8e-05 0.0015 19.1 3.7 1 23 426 449 426 449 0.98 10 19 0.00024 0.013 16.2 1.2 6 23 460 478 458 478 0.95 11 19 0.36 20 6.2 2.3 8 23 497 513 491 513 0.91 12 19 0.0036 0.2 12.5 2.5 6 23 524 542 522 542 0.95 13 19 3.7e-05 0.002 18.7 1.2 1 23 573 596 573 596 0.98 14 19 2.7e-05 0.0015 19.2 1.0 6 23 607 624 605 624 0.96 15 19 0.0011 0.058 14.1 2.6 1 23 655 678 655 678 0.98 16 19 0.0014 0.077 13.8 1.3 6 23 689 706 687 706 0.96 17 19 4.6e-05 0.0026 18.4 3.1 1 23 737 760 737 760 0.98 18 19 0.0013 0.069 13.9 0.5 6 23 771 788 769 788 0.96 19 19 0.00043 0.024 15.4 0.9 1 23 819 842 819 842 0.98
Sequence Information
- Coding Sequence
- ATGGATAGCAAAGGACATCTAGCGCTCGGCTGTAAAATATTAAGTACCACAGCTCCAGAGGTTCAGACTATGCAGAACAATCAACATATGTGTATGCCAACAATGAATGTAAACATTAAAGAAGAAAAAATAGCCGAGTGCAGAGATGAAGAAGAATCATCTGGCAGTGTTTATATGTACTCATCAGAGCCCTTAGAGTCAACAGAGTATGTAAATTACTATGACAGTAAGATTGACGTGTTGGAAGAACTGAAGAAAGAATTCCCTGAGAATGAAAGCCGTCAATTAAATTGCAGTGTGAATTGTAAAATAATTTCTGCAAATACGGGATTATTACCACTTATAAAGAAACAAAAAGTAATAATTGAAAACACAGAAGAGGAATTTACATTCAATTTAAAGGATGCAAACGGGAATAGAAATATGCAGATTACCATTAAAACGGAGAGGCTAGAAGAGCAAGACATTAGGGATAATTCTGGAGCCACTAGCGTACATTATGACGTCCTAGTAACTCCTCGAGAAGTTAAATGCAAGTTATGTGATAGAATATTCAAAAATAATTTCAACTTATTAAAGCACAATAATGACCACATTCAAATTGAAATGAACACACAAGCGGATAATGAAATTAATGAGTTAGACAAGGAACAGTCTTGCGACAAACGTTATGATAACTATAATGATATGCTTACACACGTCACTGATGTTCACAGCAAGAATAATCCCAAATGTGAAATGCGATTTAATAGCGTACCAACTCTTGAACATCACGTCACACTTTTACGCAAACATAATAATTTACCAAATCAAGTAACTCTAAACGATATAAAATGTATATATTGCAATGTAGATTTTAAACATAAATACAGTTTGAATATCCATATGAAGCTATGTCGTATTGGTAAGGAGGGTGAGGAAATTAAATACAAATGTGACTCATGTGAGCGCGTTTATAAGCATAAACAGTCTTTAGTAGTACATATAAAAAAGACTCATTATGACTATGGTAAGATGTTTGAGTGTTGGTGCGGGAAACAGTTCCCTTCACCGATACACTTGAATGAACACAAGATCTTACGTCATTGTGCCAATAGAGAAAAAGAATTATACAAATGTAAATGCTGTGAGGCGGTGTATAATTTGAAGAGCAGTTTAACAAGGCATATGAAAAAAGTTCATTATGAATGTTGGTGCGGGAAACAGTTCCCTTCACAGTTACACTTGAATGAACATAAGAGCTTGGGACATTGTACCAGTACGAAAAATAAAATATACAAATGTAATTATTGCGAGACTGTGTATAAAATGAAAAAATATTTATCAAAACACATGAGGAGGATGCATTATGATTACGGGAGAACGTTTGATTGTTGGTGCGGGAAACAGTTTCGTACACCGAAGTACTTACGTGATCATATGAAGCGGCAGCATGACGGCAAAATGAAAAAAAGAAATAACGACAAAATACAATGTGAACATTACCAAAAGATTTTCAAAACCAAACACTATTTGTTAACGCATATAAAAAGTATTCATTATGATTATGGTAAAGTATTTGAATGTTGGTGCGGGAAACAGTTCCGTACGCCGATACATTTAACTGACCATAAGAGACGGCGGCACACTGGTGTTAACATTAATGATACAAGTAATGACAGATTGAATAACCATATAAAACTATGTCTTACTGATAAGAACGGTCAAGACCTTAAATATAAATGTGAATCATGCGAGGGTGTTTATAAAAATAAGGAAACTTTAACAAGGCATATGAAGACAATGCATTATGATTACGGGAGAATGTTTGCGTGTTGGTGCGGGAAACAATTCCGTACACCAGTTAACTTACGTAATCATATGAAACGGCACCCTGATGGTAACATTAATGATACATGTAATGACAGATTGAATAACCATATGAGCCTATGTCTTACTAGTAAGGATGGTCAAAAACTTAAATATAAATGTGAAACATGCCAGGGTGTTTATAAAAATAAGCAAACTTTATTACACCATATTAAGAGGGTGCATTATGATTACGGGAGAATGTTTGCGTGTTGGTGCGGGAAACAGTTCCGTACACCGTTTAACTTAAGTCAACATAAGAGACTGCATCCTGATGGTAACATTAATGATACAAGTAATGACAGATTGAATAACCATATAAAACTATGTCTTACTGATAAGAACGGTCAAGAACTTAAATATAAATGTGAATCATGCGAGGGTGTTTATAAAACTAAGGACCATTTAACAAGGCATATGAAGAGGATGCATTATGATTACGGGAGAATGTTTGCGTGTTGGTGCGGGAAACAGTTCCGTACACCGCCTAACTTAAGTCAACATAAGAGACTGCACCCTGATGGTAACATTAATGATACAAGTAATGACAGATTGAATAACCATATGAAACTACGTCTTACTGGTAAGGACGGTCAAGAACTTAAATATAAATGTGATCCATGCGGGGGTGTTTATAAAAATAAGAAAACTTTATCAAAGCATATAAGGAAGATGCATTATGATTAG
- Protein Sequence
- MDSKGHLALGCKILSTTAPEVQTMQNNQHMCMPTMNVNIKEEKIAECRDEEESSGSVYMYSSEPLESTEYVNYYDSKIDVLEELKKEFPENESRQLNCSVNCKIISANTGLLPLIKKQKVIIENTEEEFTFNLKDANGNRNMQITIKTERLEEQDIRDNSGATSVHYDVLVTPREVKCKLCDRIFKNNFNLLKHNNDHIQIEMNTQADNEINELDKEQSCDKRYDNYNDMLTHVTDVHSKNNPKCEMRFNSVPTLEHHVTLLRKHNNLPNQVTLNDIKCIYCNVDFKHKYSLNIHMKLCRIGKEGEEIKYKCDSCERVYKHKQSLVVHIKKTHYDYGKMFECWCGKQFPSPIHLNEHKILRHCANREKELYKCKCCEAVYNLKSSLTRHMKKVHYECWCGKQFPSQLHLNEHKSLGHCTSTKNKIYKCNYCETVYKMKKYLSKHMRRMHYDYGRTFDCWCGKQFRTPKYLRDHMKRQHDGKMKKRNNDKIQCEHYQKIFKTKHYLLTHIKSIHYDYGKVFECWCGKQFRTPIHLTDHKRRRHTGVNINDTSNDRLNNHIKLCLTDKNGQDLKYKCESCEGVYKNKETLTRHMKTMHYDYGRMFACWCGKQFRTPVNLRNHMKRHPDGNINDTCNDRLNNHMSLCLTSKDGQKLKYKCETCQGVYKNKQTLLHHIKRVHYDYGRMFACWCGKQFRTPFNLSQHKRLHPDGNINDTSNDRLNNHIKLCLTDKNGQELKYKCESCEGVYKTKDHLTRHMKRMHYDYGRMFACWCGKQFRTPPNLSQHKRLHPDGNINDTSNDRLNNHMKLRLTGKDGQELKYKCDPCGGVYKNKKTLSKHIRKMHYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -