Spav010211.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:1796080-1806334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.011 0.62 10.9 3.9 1 23 183 206 183 206 0.95 2 20 0.00029 0.016 15.9 0.6 2 23 212 234 212 234 0.95 3 20 0.00022 0.012 16.3 1.2 1 23 271 294 271 294 0.97 4 20 0.11 6 7.8 1.2 5 23 304 322 302 322 0.93 5 20 0.1 5.7 7.9 3.2 1 23 331 354 331 354 0.97 6 20 0.0076 0.42 11.5 2.7 6 23 365 383 363 383 0.95 7 20 3e-05 0.0016 19.0 2.0 1 23 394 417 394 417 0.98 8 20 0.0074 0.41 11.5 2.6 6 23 428 446 426 446 0.95 9 20 0.00015 0.0084 16.8 3.5 1 23 457 480 457 481 0.97 10 20 0.0053 0.29 11.9 2.1 6 23 491 509 489 509 0.95 11 20 0.00013 0.0071 17.0 1.1 1 23 520 543 520 543 0.98 12 20 0.0082 0.45 11.4 0.7 6 23 554 572 552 572 0.94 13 20 1.8e-05 0.001 19.7 2.5 1 23 583 606 583 606 0.98 14 20 0.011 0.59 11.0 1.1 5 23 616 635 614 635 0.95 15 20 3.6e-05 0.002 18.8 1.3 1 23 647 670 647 670 0.98 16 20 1.7 95 4.0 0.5 6 23 681 699 679 699 0.93 17 20 3.7e-05 0.002 18.8 1.1 1 23 711 734 711 734 0.98 18 20 6.6 3.6e+02 2.2 1.0 5 23 744 763 741 763 0.91 19 20 0.00015 0.0081 16.8 2.1 1 23 775 798 775 798 0.98 20 20 0.013 0.71 10.7 0.6 6 23 809 827 807 827 0.96
Sequence Information
- Coding Sequence
- ATGGATTTAGAATCGTTTGGCACGAATTCGGGGTTGAAATTGGATGAAGTTTATAGAGAATTGTTCCCCGATTACAACGTAACTATTCCCATTACAAGGGAACATTCAGTATTAAGCTGTGACAAATTGAATACAGTAGTTTCAGAGAGGCTGAGGAATCTACAGGAATTAACACTGAAACAAGAAATAGTAAAATGCATGGAACAGGAAGAATCAGTTTGCAGTGAATCTGAGAATAATGAGTTAAAACTTATTACCGAACAAGAAGTAAAACATGAAAACACAGAAGAAGGATCGTTATTAAATATAAAGGAAGAAGATATGAATACAGAATACCAGATTGAAATAAAAACGGAGAGGCTGGAACAGCAAGGAATATTGTATAATGTGGGAGATCTTAGGACACGTGATGTACTGTTAACACCTCAAGAAATCCAATACAAGTTCGCTCAGAAGTCATTAAAAAATAGTGCTAATTTATTACGGCCCATTAAAGAACATATAAAAGTTGAGCACACACCAGCGGACAATGAAAGGAATGACTTACACCAATGTCAGTATTGTGAGAAAAAATTTGATACTCATAATTATATGCTAGTACACATCAGTAATGTACACAGAGAGAAAAATCCCAAATGTGAGTTATGCGGAAATCAGTTCAAAAACCTGTGGAACCTGAAACGTCATGTTCAACTTTTACACAAACCTCATAATTCTCCAAATCGAGTAACTAGAACAGGTGTGAAATTGGATGACCATATGAAGCTATGCCATACAGGTACGGAGGGTGGAGAAGATGAGAGGAGGGGATATGTATGTGTCACTTGCGAGGGAGTTTATAAAAGCAAAGCGCATTTAACAAGACATATAAAGAGAATGCATTATGATTATGGGAGAATGTTTCAATGTTGGTGCGGGAAACAGTTCCGTTCACCGAAACAATTGGGTGACCACAAGATACACCATAATAACAAGATGAAAAACGAAGAATACAAATGTACATGCTGCAAGGCGGTTTTTCAAATTAAAAGAAGTTTAACAAAACATATGATAAGAGTTCATTCTAATTATGGGAGAACGTTTGGATGTTGGTGCGGGAAAAAGTTCCGTTCACCGATACACTTAAGTGACCACAAGAGGCGACGGCACGATCCCAAGATTCAAAATGCGAATGGAAAATTCCAATGTGACTCATGCCAGAAGATTTTCAAAACCAAACAGAGTTTATTTGTACATATAAAGAGTATGCATTATGATTATGGGAGATTTTTTGAATGTTGGTGCAGGAAACAGTTCCGTTCACCGATACACTTAAGTGCACACATGAGGCGGCGGCATGATCCCAAGATTCAAAATTCAAATGGAAAATTCCAATGTGACTCATGCCAGAAGACTTTCAAAGCCAAACAAAATTTATTTGTACATATAAAGAGTATGCATCATGATTATGGGAGAATGTTTGAATGTTGGTGCGGGAAACAGTTCCGTTCACCGATACACTTGAGTGCACACAAGAGGCGACGGCACGATTCCAAGATTCAAAATGAAAATGGAAAATTCCAATGTGACTCATGCCAGAAGACTTTCAAAGCCAAACAGAGTTTACTTATACATATAAAGAGAATTCATTATGATTATGGGAAAATGTTTGCATGTTTGTGCGGGAAACAGTTCCGTTCACCGATAGACTTGCGTATGCACAAAAGGCTACAACACAAACGCAAGATTCAAAATACGAATGACAAATTCCAATGTGACTACTGCCAGAAGTTTTTCAGAGTCAAACGGAGTTTAGTTAATCATATAAAGAGATTACATTATGATTATGGGAGGACGTTTGAATGTTGGTGCGGGAAAAAGTTCCGTTCACCAATTTACTTACATGTCCACAAGAAGAGGGGTCACGATCTCAAGATTCAAAAAACAAATTATGACAAATTCCAATGTGACTCATGCCAGAAGATTTACAAAACCAAAAGCAGTTTAGTTTTACATATAAAGAGATTACATTATGACTATGGGAGAATGTTTGGATGTTTGTGCGGAGAACAGTTCTATTCTCCGATACGCTTGCGTGAGCACAAGAAGCTGCGACACGACCCCAAGATGCAAAAAACGAATTTTGACAAATACCAATGTGACTCATGCCAGAAGTCTTTCAAATCCGAAAAGAGTTTAGCTGTACATGTAAAAAGAATGCATTGTGATTATGAGAAAATGTTTGTATGTTGGTGCGGGGAACAGTTCCGTTCACCGATACGCTTACATGGACATAAGAAGCTGCGACACAATCACGAGATTCAAAATACGAATAACCAGAAGTTCCAATGTGACTTCTGTCAGAAGTTTTTTAAAGTCAAACAAAGCTTAGTTATACATATAAAGAGATCTCATTATGATTACGGTAAAGTTTTTGAGTGCTGGTGCGGGAAACAGTATCGTTCACCGATACAGTTGAACGAACACAAGAAGACAAAGCATGTTCTCTTGTTCGGCGGTTACAAGTTTTGCTTTTGA
- Protein Sequence
- MDLESFGTNSGLKLDEVYRELFPDYNVTIPITREHSVLSCDKLNTVVSERLRNLQELTLKQEIVKCMEQEESVCSESENNELKLITEQEVKHENTEEGSLLNIKEEDMNTEYQIEIKTERLEQQGILYNVGDLRTRDVLLTPQEIQYKFAQKSLKNSANLLRPIKEHIKVEHTPADNERNDLHQCQYCEKKFDTHNYMLVHISNVHREKNPKCELCGNQFKNLWNLKRHVQLLHKPHNSPNRVTRTGVKLDDHMKLCHTGTEGGEDERRGYVCVTCEGVYKSKAHLTRHIKRMHYDYGRMFQCWCGKQFRSPKQLGDHKIHHNNKMKNEEYKCTCCKAVFQIKRSLTKHMIRVHSNYGRTFGCWCGKKFRSPIHLSDHKRRRHDPKIQNANGKFQCDSCQKIFKTKQSLFVHIKSMHYDYGRFFECWCRKQFRSPIHLSAHMRRRHDPKIQNSNGKFQCDSCQKTFKAKQNLFVHIKSMHHDYGRMFECWCGKQFRSPIHLSAHKRRRHDSKIQNENGKFQCDSCQKTFKAKQSLLIHIKRIHYDYGKMFACLCGKQFRSPIDLRMHKRLQHKRKIQNTNDKFQCDYCQKFFRVKRSLVNHIKRLHYDYGRTFECWCGKKFRSPIYLHVHKKRGHDLKIQKTNYDKFQCDSCQKIYKTKSSLVLHIKRLHYDYGRMFGCLCGEQFYSPIRLREHKKLRHDPKMQKTNFDKYQCDSCQKSFKSEKSLAVHVKRMHCDYEKMFVCWCGEQFRSPIRLHGHKKLRHNHEIQNTNNQKFQCDFCQKFFKVKQSLVIHIKRSHYDYGKVFECWCGKQYRSPIQLNEHKKTKHVLLFGGYKFCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -