Spav010321.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2861159-2874559[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0044 0.24 12.2 1.6 2 23 216 237 215 237 0.94 2 20 0.034 1.9 9.4 0.7 1 19 254 272 254 274 0.87 3 20 0.73 40 5.2 0.0 4 20 282 298 282 300 0.92 4 20 0.014 0.78 10.6 4.6 1 23 324 347 324 347 0.98 5 20 0.16 8.6 7.3 0.8 6 23 358 376 356 376 0.95 6 20 0.0033 0.18 12.6 0.8 1 23 388 411 388 411 0.97 7 20 0.79 43 5.1 1.1 6 23 422 440 420 440 0.94 8 20 0.00023 0.013 16.2 0.7 2 23 453 475 452 475 0.96 9 20 0.042 2.3 9.1 1.5 6 19 486 499 484 504 0.92 10 20 0.00013 0.0073 17.0 0.9 1 23 516 539 516 539 0.97 11 20 0.0037 0.2 12.4 2.5 6 23 550 568 548 568 0.95 12 20 0.00015 0.0081 16.8 2.1 1 23 580 603 580 603 0.96 13 20 2.5e-05 0.0013 19.3 1.3 1 23 615 638 615 638 0.97 14 20 0.0021 0.11 13.2 0.9 6 23 649 667 647 667 0.95 15 20 1e-05 0.00056 20.5 1.5 1 23 679 702 679 702 0.97 16 20 0.004 0.22 12.3 2.3 6 23 713 731 711 731 0.95 17 20 7.8e-06 0.00043 20.9 1.0 1 23 743 766 743 766 0.98 18 20 0.0026 0.14 12.9 1.2 6 23 777 795 775 795 0.94 19 20 0.00024 0.013 16.2 1.1 1 23 807 830 807 830 0.96 20 20 0.15 8 7.4 0.2 6 20 841 855 841 856 0.95
Sequence Information
- Coding Sequence
- ATGGACAGCACGGAACATCTAGAGCCCAGCTGTGATACATTGATTACTACAGCTCCAGACGTACAGTTGAATCTACAGATGTCTACATCAACATGGAAACAAGAGAAAGTAGAGTGTATAGTTGAGGAAGAATCGCCTTGCAGTGATGATAGGTGTCCGATTATACCAGAGTCATCAAATTATGTCAATTACAACAACAGTAAAATTTGTGTGTTGGATGAAGTGAAGAAGGAACGCCCTGAGGATGAATGCCCTCAATCAGACTGCAGTACGGATATTAAAATAGTCAATGAATGTCCGATTATGCCATTCGAGTCATCAAAATATGTCAATTACTATGATAGTCAACTTTGTGTGTTGGATGAAGTGAAGAAGGAACTCCCTGAGGATGAATGCCCTCAATCAGACTGCAGTATGGATAGTAAAATAGTTTGTGAAGATAAGGAATTATTAAAAGTTATAGACAAACAAGAAGTAAAACATAAAAACATAGAAGAGGAACTGTCATTAATTATAAACCAAGAAAATGTTGATAAAAAGTACCAGGTTACAATAAAAACGGAGAGGCTAGAAGAACAAGATATTTTGGATAATGCTGACGCGACTGGCATATACTATGATGTTCTGTTAACTCCTGAAGAAGTTCAATGCAAGTCATGTGGTAGAATATTCGAAAACAGTCACAAGTTATTAAATCACAATAATGGACACTTAAAAGTTGAAACGAAGACTTCAGATGATAATGAAATAAATAAGTTACACCAGTGCCAATATTGCGACAAAGGTTTTAACAAAGATGATAATAAGCTTGCGCACGTCAGCGATATTCCCAACAAGAAAATACCCAAATGTGGAAACCAATTCAAGAACGTGCCGAATTTTAACCGTCACGTTCTGCTTCTAGAAAAACCGAAGAAGTCTCCAAAGAAATTAATTCGAAAAAAATTAAAATATACAAATGAGGCCAAATTCAAATGTGACTCCTGCCAGAAAGTTCTCAGAAGCAAAAAGTGCTTATTACAACATACAAAAAGAGTACATTATGATTATGGTAAAGTATTTGAATGTTGGTGCGGGAAACAGTTCCGTACACCGCTGCGCCTTTATGATCATAAGAGGATGCAGCATGATCGCAATGTTAAAGATATAAATGAGAGCAAATTCCAATGTGACTCTTGCCAGAAAGTTCTCGGAAGTAAAAAGACTTTATTACAACATATTAAAAATATGCATTATGATTATGGTAAAGTATTTGAATGTTGGTGCGGGCAACAGTTCCGTGCACCGATGCTCCTTTATCACCATAAGCGGATGCTGCATGATGCCAAGGTTAAAGATACAAATGAGAGCAAATTGCAATGTGACTCTTGCCAGAAAGTACTCAGAAACAAACAAAGCTTATTACGACATATAAGAAATATACATTATGATTATGGTAAAGTATTTGAATGTTGGTGCGGGAAACAGTTCCGTACACCGATGCACCTTAGTCGGCATAAGTGGAAGTTGCATGATGGCAAGTATATAGATACAAATGAGAGCAAATTCCAATGTAACTTTTGCCAAAAAGTTCTCGGAAACAAACAGAGTTTATTACGACATATAAGAAATATACATTATGATTATGGTAAAGTATTTGAATGTTGGTGCGGTAAACACTTTCGTACGCCGAATCTGCTTTATAAGCATAAGCGGATGCTGCATGATGGCAAGGACAAAGATACAAATGAGAGCAAATTCCAATGTGATTCTTGCCAGAAAGTTTTCAGCAGCAAAATGAGTTTATTACAACATACAAAATATATGCACTATGATTATGGTAAAAATACAAATGACGCCAATTTCCAATGTGACTCTTGCCAGAAAGTTTTCAGAAGAGAAATGAGTTTATTACGACATATAAAAAATATGCATTATGATTATGGTAAAGTATTTGAATGTTGGTGCGGGAAACAGTTCCGTACGCCGATGCTCCTTAGTCGGCATAAGCGGATGCTGCATGATGGCAAGGATAAAGATACAAATGAGAGCAAATTCCAATGTGACTCTTGCCAGAAAGTTTTCAGAAGAAAAATGAGTTTATTACGACATATACAATATATTCATTATGATTACGGTAAAGTATTTGAATGTTGGTGCGGGAAACAGTTCCGTACGCCAATGCACCTTAGTCGGCATAAGCAGATGCTGCATGATGGCAAGGATAAAGATACAAATGAGAACAAATTCCAATGTGATTCTTGCCAGAAAGTTTTCAGAAGTAATATGAGTTTATTACGACATATAAAAAGTGTGCATAATGATTATGGTAAAGTATTTGAATGTTTATGTGGTAAACAGTTCCGTACGCCGATGCTCCTTAATCGGCATAAGCGGTTGCAGCATGATAGCAAGGATAAAGATACAAATGCGAGCAAATTCCAATGTGAGTCTTGCCAGAAAGTATTCAACAGAAAAATTAGTTTATTACTACATACAAAAAATATACATTATGATTATGGTAAAGTATTTCAATGTTGTTGCGGGAAACAGTTCCGTACACCGATGCTCCTTTATAAGCATAAGAAATGCCTGCAACATGATGATTTCAGAGATACAAACAATGACATGTCCAGTGTACCTCCTTTTGAGGGAAATATTTCAAAATTAAACAACTTTTAG
- Protein Sequence
- MDSTEHLEPSCDTLITTAPDVQLNLQMSTSTWKQEKVECIVEEESPCSDDRCPIIPESSNYVNYNNSKICVLDEVKKERPEDECPQSDCSTDIKIVNECPIMPFESSKYVNYYDSQLCVLDEVKKELPEDECPQSDCSMDSKIVCEDKELLKVIDKQEVKHKNIEEELSLIINQENVDKKYQVTIKTERLEEQDILDNADATGIYYDVLLTPEEVQCKSCGRIFENSHKLLNHNNGHLKVETKTSDDNEINKLHQCQYCDKGFNKDDNKLAHVSDIPNKKIPKCGNQFKNVPNFNRHVLLLEKPKKSPKKLIRKKLKYTNEAKFKCDSCQKVLRSKKCLLQHTKRVHYDYGKVFECWCGKQFRTPLRLYDHKRMQHDRNVKDINESKFQCDSCQKVLGSKKTLLQHIKNMHYDYGKVFECWCGQQFRAPMLLYHHKRMLHDAKVKDTNESKLQCDSCQKVLRNKQSLLRHIRNIHYDYGKVFECWCGKQFRTPMHLSRHKWKLHDGKYIDTNESKFQCNFCQKVLGNKQSLLRHIRNIHYDYGKVFECWCGKHFRTPNLLYKHKRMLHDGKDKDTNESKFQCDSCQKVFSSKMSLLQHTKYMHYDYGKNTNDANFQCDSCQKVFRREMSLLRHIKNMHYDYGKVFECWCGKQFRTPMLLSRHKRMLHDGKDKDTNESKFQCDSCQKVFRRKMSLLRHIQYIHYDYGKVFECWCGKQFRTPMHLSRHKQMLHDGKDKDTNENKFQCDSCQKVFRSNMSLLRHIKSVHNDYGKVFECLCGKQFRTPMLLNRHKRLQHDSKDKDTNASKFQCESCQKVFNRKISLLLHTKNIHYDYGKVFQCCCGKQFRTPMLLYKHKKCLQHDDFRDTNNDMSSVPPFEGNISKLNNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -