Spav010293.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2454873-2460923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.1e-05 0.0023 18.6 1.0 2 23 175 196 174 196 0.95 2 18 0.54 29 5.6 3.2 1 20 214 233 214 237 0.91 3 18 5.9e-06 0.00033 21.2 2.6 1 23 309 332 309 332 0.98 4 18 0.0012 0.067 13.9 1.0 5 23 342 361 340 361 0.95 5 18 8.2e-05 0.0045 17.7 4.8 2 23 367 389 366 389 0.96 6 18 0.022 1.2 10.0 2.0 6 23 400 418 398 418 0.96 7 18 0.0088 0.48 11.3 0.4 1 23 448 471 448 471 0.98 8 18 0.0003 0.017 15.9 3.4 6 23 482 500 480 500 0.96 9 18 0.00013 0.0071 17.0 2.8 2 23 507 529 506 530 0.96 10 18 0.00032 0.018 15.8 0.3 6 23 540 558 538 558 0.95 11 18 0.0079 0.44 11.4 1.5 1 23 591 614 591 614 0.98 12 18 0.00032 0.017 15.8 0.4 6 23 625 643 623 643 0.95 13 18 4.5e-06 0.00025 21.6 4.2 1 23 649 672 649 672 0.97 14 18 0.14 7.9 7.4 1.5 6 23 683 701 681 701 0.95 15 18 5.8e-05 0.0032 18.1 3.1 1 23 734 757 734 757 0.98 16 18 0.0013 0.069 13.9 2.7 6 23 768 786 766 786 0.91 17 18 0.00018 0.0099 16.6 0.7 2 23 793 815 792 815 0.97 18 18 0.001 0.055 14.2 1.4 5 23 825 844 823 844 0.95
Sequence Information
- Coding Sequence
- ATGGATAGCTGGGAAGTTCCAGTACACAGCTGGGATACATTGAGTACCAAAACTCCAGAGGCACAGTGGAATCTAAAGATGTGTTTGGCCACATTGAAAAAAGAAAAAGTAGAGTGCATAGACGACGAAGAATCACCTTGCAGTGAGGAAATGCCAGTCCTTATATTCCAGTATCCATCTGAGCCATTGGATTCATCACAGTATGAAAATCATTATGACAGTAAGGGTTTTGTGGTGGAAAAACTGAAAAAAGAATTCCCTGAGGATGAACATCCTCAATCAGACTTTAGTATTAATTATACAATCGATCATGAAAATAAAGAATTATTAAAACTTATAGACAAACAAGAAGTAAATCATGAAAACACAGAGGAGGGATTGTCATTAATTATAAAGGAAGAAAATGATAATAAAAACAACCAGTTTATAGTAAAAAGAGAGAAGATAGATGAGCAAGATACTTTTAATAGTGCTGGAGCAACTAGCATACATTATGATGTCCTGATGACTCCTCACGAAGTTCAATGCAAGTTGTGTGGTCGAATATTTAAAAACAGTTTCAATTTATTGCGGCACAATAATGAACACATAAAAGTTGAAATGAACACACCGGGGTATAATAGTAAAGCGACGGAGTTACATCAGTGCCAATATTGCGACAATTTTTGTAATAATCATGATAATATGCTTGCACACGCCGGTGATGTTCACAGCGAGGAAATACCTGAAGATAAATTATGCGGAGAGCATTTCGAAAGCGCACCAAGTCTTAAACGTCGTGTAGTGGTTTTACAAAAACAAATGTTTCCAAACCAAGTACCTGGAGACAGTGTGAAGTGTATATATTCCAATGCAGAATACAAAGACACATTGTACAAACATATGCAGCTATGTCTTACTGGTAAGAAGGATGAGGAAATGAAATATAAATGTGATTCATGCAAGCGCGTTTTTAAAAGTGAACACAATTTAACAGCACATATAAAGAGAGTTCATTATGATTACGGGAGAACGTTCACATGTTGGTGCGGGAAACAGTTCCGTACACCCACATACTTGTATATGCATATGAAGCGGCAGCATGATAACATGCAACTTCAATGTAACTATTGCCAAAAAACATTCAATTCCAAATGCTATTTATTAAAGCATATAAAAAATATGCATTATGATTATGGTGAAGTATTTGAATGTAGGTGCGGGAAACAGTTCCGTACGCCGAGACTCTTATATTTACATAAGAGACGGCAGCATGATCGCAATATTAATGAAAAAAAAAATTACACATTGAATAACCATCGGAAGCCATTTCGTACTGGTAAGGAGGGTGAAGAAATGAAATATAAATGTGACTCATGCGCGGGTGTTTATAAAAGTAAACCGTCTTTAACAATGCATATAAAGAGAATGCATTATGATTATGGCAGGACGTTTGAATGTCGGTGCGGGAAACAGTTCCGTACACCGACACACTTACGTTTACATATGAGGATGCAGCATAATGACAACTTGAACGTTCAATGTGACTATTGCCAGAAATTTTATAAATCCAAATACCGTTTAGTAAGACATATAAAAATGATTCATCATGATTATGGTAAAGTATTTGCATGTTGGTGCGGGAAACAGTTCCGTACACCGATTAACTTACGTGTTCATGTGAGGATGCAGCATGATGGCGTCATTAATGATACAGATAATGATAAATTAAACGGATCGAATAACCATATGAAGCTCAATCGTACTGGTAAGGATGGCGAAGAAATGAAATATAAATGTGACTCATGCGAGCGCGTCTATAAAAGCAAAATGATTTTAACAACGCATATAAAGAGAACGCATATTGGTTACGGGAGTATGTTTGTTTGTTGGTGCGGGAAACAGTTCCGTACACCGATATACTTAAATGCGCATATGAAGCGGCAGCATAATGGCAAAATGAAATTTCAATGTGACCATTGCCAAAAGAAATTTAATTCCAAATCTTATTTAGTAAAGCATATAAAAAATATTCATTATGATTATGGTAAAGTATTTGAATGTTTGTGTGGGAAACAGTTCCGTACGCCGATACGCTTATATTTACATAAGAGACGGAAGCATAATGGCAACATTAATGATATAAATAATGATAAATTACATCGATCGAATAACCATATGAAGCTAAGTCGTATTGGTAAAGAGGGTGAAGAAATGAAATATAAATGTGATTTATGCGAGCGTGTTTATAAAAGTAAACATTCTTTAACAATGCATTTAAAGAGAATTCATTATAATCACGGGAGAACGTTTGCGTGTTGGTGCGGGAAACGGTTCCGTACACCGACACACTTACGCAAGCATACGAGTCTGCTGCATAATGGCGAAATGAGAGTTCAATGTGACTATTGCCAGAAATTTTATAAAACCAAAACCTATTTAGGAGAGCATATAAAAATGGTTCATTATGATTATGGTAAAGTATTTGAATGTCAGTGCGGGAAACTGTTTCGCACGCCGATACATTTACGTGTACATATGAGGCTGCGGCATGATGGCAAAATGGAAGATAGAAATTCATGA
- Protein Sequence
- MDSWEVPVHSWDTLSTKTPEAQWNLKMCLATLKKEKVECIDDEESPCSEEMPVLIFQYPSEPLDSSQYENHYDSKGFVVEKLKKEFPEDEHPQSDFSINYTIDHENKELLKLIDKQEVNHENTEEGLSLIIKEENDNKNNQFIVKREKIDEQDTFNSAGATSIHYDVLMTPHEVQCKLCGRIFKNSFNLLRHNNEHIKVEMNTPGYNSKATELHQCQYCDNFCNNHDNMLAHAGDVHSEEIPEDKLCGEHFESAPSLKRRVVVLQKQMFPNQVPGDSVKCIYSNAEYKDTLYKHMQLCLTGKKDEEMKYKCDSCKRVFKSEHNLTAHIKRVHYDYGRTFTCWCGKQFRTPTYLYMHMKRQHDNMQLQCNYCQKTFNSKCYLLKHIKNMHYDYGEVFECRCGKQFRTPRLLYLHKRRQHDRNINEKKNYTLNNHRKPFRTGKEGEEMKYKCDSCAGVYKSKPSLTMHIKRMHYDYGRTFECRCGKQFRTPTHLRLHMRMQHNDNLNVQCDYCQKFYKSKYRLVRHIKMIHHDYGKVFACWCGKQFRTPINLRVHVRMQHDGVINDTDNDKLNGSNNHMKLNRTGKDGEEMKYKCDSCERVYKSKMILTTHIKRTHIGYGSMFVCWCGKQFRTPIYLNAHMKRQHNGKMKFQCDHCQKKFNSKSYLVKHIKNIHYDYGKVFECLCGKQFRTPIRLYLHKRRKHNGNINDINNDKLHRSNNHMKLSRIGKEGEEMKYKCDLCERVYKSKHSLTMHLKRIHYNHGRTFACWCGKRFRTPTHLRKHTSLLHNGEMRVQCDYCQKFYKTKTYLGEHIKMVHYDYGKVFECQCGKLFRTPIHLRVHMRLRHDGKMEDRNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -