Spav010245.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:2073142-2076889[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00016 0.0086 16.8 1.0 2 23 69 90 68 90 0.91 2 21 3.4 1.9e+02 3.1 0.1 7 20 113 126 107 130 0.79 3 21 0.014 0.77 10.6 5.0 1 23 172 195 172 195 0.98 4 21 0.068 3.8 8.5 0.4 6 23 206 224 204 224 0.95 5 21 5.7e-05 0.0031 18.1 2.3 1 23 246 269 246 269 0.98 6 21 0.029 1.6 9.6 1.1 6 23 280 298 278 298 0.92 7 21 0.003 0.16 12.7 1.3 1 23 320 343 320 343 0.98 8 21 0.00059 0.032 15.0 0.7 5 23 353 372 351 372 0.95 9 21 0.00012 0.0068 17.1 1.2 1 23 394 417 394 417 0.98 10 21 0.0093 0.51 11.2 0.3 5 20 427 442 425 446 0.91 11 21 0.00077 0.042 14.6 0.9 1 23 468 491 468 491 0.98 12 21 0.00017 0.0096 16.6 0.6 6 23 502 520 500 520 0.95 13 21 0.0043 0.23 12.2 1.3 1 23 542 565 542 565 0.98 14 21 5.1e-05 0.0028 18.3 0.6 6 23 576 594 574 594 0.96 15 21 0.0034 0.19 12.6 0.5 1 23 616 639 616 639 0.98 16 21 0.00038 0.021 15.6 1.2 6 23 650 668 648 668 0.95 17 21 0.0031 0.17 12.7 1.5 1 23 690 713 690 713 0.98 18 21 0.005 0.27 12.0 1.0 6 23 724 742 722 742 0.95 19 21 0.0031 0.17 12.7 1.5 1 23 764 787 764 787 0.98 20 21 0.005 0.27 12.0 1.0 6 23 798 816 796 816 0.95 21 21 0.0031 0.17 12.7 1.5 1 23 838 861 838 861 0.98
Sequence Information
- Coding Sequence
- ATGGAATTATCAAAACTTATAGACGAACAACAAAAAAAACATGAAAATTCAGAGGATGGACTGTCTTTATTAATAAACGAAGAAAATGTCAATAAAATGTACCAGGTTACAGTAAAAATGGAGAGGCTAGAATTACCAGAAATTTTGGATAATCCTGAGTCGACTAGCATACATTATGATGTCCTGGTAACTCCTCAAGTAGTTCAATGCAAGTTGTGCGGTAGAATATTCAAAAACAGTTTCAATTTATTAAAACACAATTACGAACACATGAAAGTTGAAATAAACACATCAGAGGATAAAGAAATGATTGCTTTACACCAGTGCCAATATTATGACAAAGTTTTCAAAAATAGCGATAACATTCTTGCACATGTCGGTGATGTTCACAACCAGAAACAACCTAAAGACAAATTATGCCTAAAACAATTACCCAGCACCATGCACCCTGATGGTAACATTAATGATACAAATAATGACAAACTTACTGATAAGAAGGCTGAGAAAATGAAATATAAATGTGACTCATGTGAAGGTACTTATAAAAATAAATGTTATTTAACTCAGCATATAAAGAGGAAGCATTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGCAACAGTTCCGTGCACCTATACAGTTACGTATCCATAGGAGGCGGCAGCATGATGGTAACATTAATGGTACAAATAATGACAAAGTTACTGGTAAGGAGGTTGAGAAAATGAAATATAAATGTGACTCATGTGAAGGTACTTTTAGAAGTAAAGATTATTTAACTCGGCATATAAAGAGGAAGCATTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGGAACAGTTCCGTACACCGCATTACTTACGTATCCATAGGAGTCAGCTGCATGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGCAGGTTAAGAAAATTAAATATAAATGTGACTCATGTGAAGGTACTTTTAAAAGTAAACAATATATTAGAATACATATAAAGACGATGCATTATGATTACGGGAGAACGTTTGAATGTTGGTGCGGGAAACAGTTCCGTACACCGCAGTACTTACGTATCCATAGGAGGCGGCTGCATGATGATAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGCAGGTTAAGAAAATGAAATATAAATGTGACTCATGTGAAGGTACTTATAAAAGTAAAGATTCTTTAACTCAGCATATAAAGACGATGCATTATGATTACGGGAGAACGTTTGAATGTTGGTGCGGGAAACAGTTCCGTACACCGAAATACTTACGTGTGCATATCTGGCGGCAGCATGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGCAGGTTAAGAAAATGAAATATAAATGTGACTCATGTGAAGGTATTTATAAAAGTAAAGATTCTTTAACTCAGCATATAAAGATGAAGCATTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGAAACAGTTCCGTACACCGACATACTTACGTGTGCATATGAGGCTGCAGCATGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGGAGGTTGAGAAAATGAAATATAAATGTGACTCATGTGAAGGTACTTATAAAACTAAAACATCTTTGGGACAGCATATAAAGATGAAGCATTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGAAACAGTTCCGTACGCCAATAAACTTACGTGTGCATATGAGGCGGCAGCATGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGGAGGTTGAGAAAATTAAATATAAATGTGACTCATGTGAAGGTACTTATAAAACTAAAGAATCTTTGGGAATCCATATAAAGAGGATGCATTATGATTACGGGAGAACGTTTGCGTGTTGGTGCGGGAAAGAATTCCGTTCACCGATACACTTACGTGACCATATGAGGCAGCAGCATGATGGTAACATTAATGGCACAAATAATGACAAACTTACTGGTAAGGAGGTTGAGAAAATTAAATATAAATGTGACTCATGTGAAGGTACTTATAAAACTAAACAATCTTTGGGAAAGCATATAAAGAGGTCTCATTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGGAACAGTTCCGTTCGCCAATGCACTTAAGTGAGCATATGAGGCAGCAGCATGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGGAGGTTGAGAAAATTAAATATAAATGTGACTCATGTGAAGGTACTTATAAAACTAAACAATCTTTGGGAAAGCATATAAAGAGGTCTCATTATGATTACGGGAGAACGTTTGCATGTTGGTGCGGGGAACAGTTCCGTTCGCCAATGCACTTAAGTGAGCATATGAGGCAGCAGCATGATGGTAACATTAATGGTACAAATAATGACAAACTTACTGGTAAGGAGGTTGAGAAAATTAAATATAAATGTGACTCATGTGAAGGTACTTATAAAACTAAACAATCTTTGGGAAAGCATATAAAGAGGTCTCATTATGATTACGGGAGAACGTTTGCATGTTGGTGA
- Protein Sequence
- MELSKLIDEQQKKHENSEDGLSLLINEENVNKMYQVTVKMERLELPEILDNPESTSIHYDVLVTPQVVQCKLCGRIFKNSFNLLKHNYEHMKVEINTSEDKEMIALHQCQYYDKVFKNSDNILAHVGDVHNQKQPKDKLCLKQLPSTMHPDGNINDTNNDKLTDKKAEKMKYKCDSCEGTYKNKCYLTQHIKRKHYDYGRTFACWCGQQFRAPIQLRIHRRRQHDGNINGTNNDKVTGKEVEKMKYKCDSCEGTFRSKDYLTRHIKRKHYDYGRTFACWCGEQFRTPHYLRIHRSQLHDGNINGTNNDKLTGKQVKKIKYKCDSCEGTFKSKQYIRIHIKTMHYDYGRTFECWCGKQFRTPQYLRIHRRRLHDDNINGTNNDKLTGKQVKKMKYKCDSCEGTYKSKDSLTQHIKTMHYDYGRTFECWCGKQFRTPKYLRVHIWRQHDGNINGTNNDKLTGKQVKKMKYKCDSCEGIYKSKDSLTQHIKMKHYDYGRTFACWCGKQFRTPTYLRVHMRLQHDGNINGTNNDKLTGKEVEKMKYKCDSCEGTYKTKTSLGQHIKMKHYDYGRTFACWCGKQFRTPINLRVHMRRQHDGNINGTNNDKLTGKEVEKIKYKCDSCEGTYKTKESLGIHIKRMHYDYGRTFACWCGKEFRSPIHLRDHMRQQHDGNINGTNNDKLTGKEVEKIKYKCDSCEGTYKTKQSLGKHIKRSHYDYGRTFACWCGEQFRSPMHLSEHMRQQHDGNINGTNNDKLTGKEVEKIKYKCDSCEGTYKTKQSLGKHIKRSHYDYGRTFACWCGEQFRSPMHLSEHMRQQHDGNINGTNNDKLTGKEVEKIKYKCDSCEGTYKTKQSLGKHIKRSHYDYGRTFACW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -