Sjap017717.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065316.1:16625572-16645754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.016 1.7 10.4 1.4 1 23 464 486 464 486 0.96 2 12 0.0008 0.088 14.5 2.4 2 23 494 516 494 516 0.97 3 12 0.012 1.3 10.8 3.8 1 23 520 542 520 542 0.96 4 12 0.11 12 7.8 0.1 1 23 547 570 547 570 0.98 5 12 7.1 7.8e+02 2.1 1.2 1 19 577 595 577 600 0.88 6 12 0.057 6.3 8.7 0.2 1 23 612 636 612 636 0.92 7 12 0.0008 0.088 14.5 0.0 2 23 654 676 654 676 0.96 8 12 2.1 2.3e+02 3.7 2.3 3 23 697 718 696 718 0.94 9 12 0.0014 0.15 13.8 1.1 2 23 732 753 732 753 0.96 10 12 0.46 50 5.8 0.3 2 23 759 780 758 780 0.91 11 12 3.9e-05 0.0042 18.7 3.7 1 23 786 808 786 808 0.97 12 12 3.4e-06 0.00037 22.0 0.9 1 23 814 837 814 837 0.98
Sequence Information
- Coding Sequence
- ATGATTGAACGGACACATGTAGGCGGTGCAATCGTACGGTGTGACAAAGAAACGGTTCGAGCCCAAGCTGTCATACACTCGCTTGGGATACGCAATTGGTCCGCGGGAGCGGCCTTCGCTCTTGCTGGCTCTCCGctgtgggagttggaggcggaagGGCTCGCTATCGCTGTATATTGGTTTACGGTGGCGAGGAAGAAGAAAGGGAAGGGGCTTCCAGCTCCCACAGAAGTTGAAAATTTGAGGCGGCAGATCCAAGTGGAAGTTTTGCAATGGTGGACACAGGACCTGGTGGAAGCGCGCTATTGgcgatatacaagATTACCATCTAATCCTGATCTAAAAGCGAAATGGCTAAAAGCAATAGGACGTCCAAACTGGGAGCCGTCGCTTCATATGCGTTTATGCAGTGTGCATTTTGATAACAACCAGATAAGTCGTGAAGGTTATAGAACTAGAATTAAAGACGATGCCTGTCCAACCAAGTGCCTACCAGTTAATTCAAACTTTGAAGCATCTTACTTAGAAGTGTGCAGAATATGTTTGGCTACAGATGTAAAGATGTATAGCCTCCAACATGGATTGCTGAAGTCATGTATTGGGGATATTCATGGAATGTTTGAAAATATTCATATAGAAGGAATGCCACAGTATGTTTGCTATGAATGTGGAGCTTGTCTAATAAAGTTTTACCGTCTATTAGAAAAGAGTATGATAGCACAAGCGACACTTCTAGATATATTTGCACATAATGGAAAGctATCAACAAACTTGATTAAAAGACAAGATCGAAAAcaacttaatttaaattcatcATTAAGTTGCTATAAAACAACCcatatctataaatattcatATGACTGTGATGAAAAATGTATATCATTTATTAAAAGTGATGATATTCATCTTATTGTCAATAATGATATTGAACTTCAACTACAAAATGAATTTCTAAGTGGTAGATGGGAAGATACTCTTAAAACTgatgttatttataaagaagaaaGTGAACATGGAGGAATAACATATTGTAATGATACTGATAAAATAAACAGTGTTGATCCAATAGACTCCAAAGAACACATTAACATTACTGTTCCAAATACGAAAGATTGCATGTCAGAAGATGACAATTTCTTACATGATTATGATGAATCTTCACCAGAATATGGTGATGTCATAGAGATGAACagtaaaaaaCAAAATTGTGGTTCCAATAAATTGGAAAGGAGGTCAACAATAaaggataatttaaaaagtaacaatGGACTCACTCGTAGTGAAGTTAACATACAAGAACATTTTGACATTGTGAAGTTGTCGTTACAGGAGCAAATTGAAGAATGGAAGAGTGCTAGAATAAATAGAACATTAACCagtgaaacaatatttaaatgcaAGATCTGTTTGAAAATATTTGCTCACATCAAACCATACCGAAATCATATTTCTGGGCATGATCCtAGCCGCGGAAAAGAAGAATGCCCTGTATGTAAATTACGTTTTAAGAACAAAATACACGTGCAGTCACATAGACGTCGTATACACGGGAATAAATTTTGTTGCAAGAAATGCCCAAAAGTTTTCAGTAATGtAGCCGTCGCGAGGAAGCACCACCGCTGGCACTCTGGTCATCGCTACAAGTGCGGGTGGTGCCCGTTCACTAGTGCGCACGAGTCGGCAGTGGGAGCGCACGCGCGTACGTCGCATGCGCACGTGCCCGGAGCACACGCGTGCGTGCGCTGCGGAGTTGCGTGCCGTTCTGCGCGCGGACTCGCGCTACATTGCTCCATTGCACATAAAAATCAATCGGATATGGAAATAAGTCCAGAGTATAAATGTGAATTATGTGACGTATACTTTGCATCGGAAGGCGCCAGACGTGTTCACCTACTTACATCGAGACATAACAAGTCAAGTTTATGcgaTTCAAAGACACTTGACATTGCTATCAAAAATACATGTGATAAATGCGGTGCGGAATTCTCATCTCCTGTCGAAGTAAAAGCGCACATCGACACTGAGCATCGGAATGCAGCACGGAGGAAAACCGGCTGGAGAAGACCTGATGACTCATATCCGACTTTATGTGAACATTGTGGAGAAACGGTGAACAGTCGCAAGGCACATTACTGGCATGTCCGCAGGCAGCATCCCAAAGAGAAGCATCTGTATCAACCTGTCATCACCGCCGTCTGTGAGATTTGCGGAAAAGGATTTCAGAACTCGACGAAATTACACCTTCACGAGCTACGTCATGGTCAGCCGACAGTGAAATGCGCTCACTGTCCGCGACTGTTCTACGATAAGTACGCGGCCGCGATACACAGCACCGTGCACGTGCCAGCAAAGCCGCACTCGTGTCGTACGTGCGGACGCACGTTCAAGTTGAAGGGAAACCTGCAAAGGCATTCTCGGGTTCATTCTAATGTTACTCCGTACGAATGTTCCATATgcggaaaaaaatttaaatactcgTACAGTGTGAACCTCCACGTACGAACTGTCCACTACAAGATGCCGCATCCGCCGCGGAAGAAGAGAAAGATCATAAGAAATGACAGTCACAGTCcagataatattaacatttag
- Protein Sequence
- MIERTHVGGAIVRCDKETVRAQAVIHSLGIRNWSAGAAFALAGSPLWELEAEGLAIAVYWFTVARKKKGKGLPAPTEVENLRRQIQVEVLQWWTQDLVEARYWRYTRLPSNPDLKAKWLKAIGRPNWEPSLHMRLCSVHFDNNQISREGYRTRIKDDACPTKCLPVNSNFEASYLEVCRICLATDVKMYSLQHGLLKSCIGDIHGMFENIHIEGMPQYVCYECGACLIKFYRLLEKSMIAQATLLDIFAHNGKLSTNLIKRQDRKQLNLNSSLSCYKTTHIYKYSYDCDEKCISFIKSDDIHLIVNNDIELQLQNEFLSGRWEDTLKTDVIYKEESEHGGITYCNDTDKINSVDPIDSKEHINITVPNTKDCMSEDDNFLHDYDESSPEYGDVIEMNSKKQNCGSNKLERRSTIKDNLKSNNGLTRSEVNIQEHFDIVKLSLQEQIEEWKSARINRTLTSETIFKCKICLKIFAHIKPYRNHISGHDPSRGKEECPVCKLRFKNKIHVQSHRRRIHGNKFCCKKCPKVFSNVAVARKHHRWHSGHRYKCGWCPFTSAHESAVGAHARTSHAHVPGAHACVRCGVACRSARGLALHCSIAHKNQSDMEISPEYKCELCDVYFASEGARRVHLLTSRHNKSSLCDSKTLDIAIKNTCDKCGAEFSSPVEVKAHIDTEHRNAARRKTGWRRPDDSYPTLCEHCGETVNSRKAHYWHVRRQHPKEKHLYQPVITAVCEICGKGFQNSTKLHLHELRHGQPTVKCAHCPRLFYDKYAAAIHSTVHVPAKPHSCRTCGRTFKLKGNLQRHSRVHSNVTPYECSICGKKFKYSYSVNLHVRTVHYKMPHPPRKKRKIIRNDSHSPDNINI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316450; iTF_01317727; iTF_01317356;
- 90% Identity
- iTF_01316450;
- 80% Identity
- iTF_01316450;