Sjap022556.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065321.1:2331738-2350536[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.032 3.5 9.5 4.4 1 23 292 314 292 314 0.97 2 12 0.00011 0.012 17.2 1.5 2 23 322 343 321 343 0.94 3 12 0.0082 0.9 11.3 0.4 1 23 347 369 347 369 0.97 4 12 0.00045 0.049 15.3 0.9 1 23 374 397 374 397 0.98 5 12 0.0011 0.12 14.1 0.2 1 23 401 424 401 424 0.94 6 12 0.0082 0.9 11.3 0.5 2 21 444 463 444 473 0.93 7 12 4.2e-05 0.0046 18.5 1.8 3 23 478 499 478 499 0.98 8 12 0.21 23 6.9 0.7 2 23 519 541 519 541 0.97 9 12 4e-05 0.0044 18.6 1.3 1 23 552 574 552 574 0.97 10 12 0.00015 0.016 16.8 6.2 1 23 580 602 580 602 0.99 11 12 1.6 1.7e+02 4.2 5.3 1 21 608 628 608 630 0.93 12 12 5.4e-05 0.0059 18.2 0.2 1 23 636 659 636 659 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTAGTAAAAGTGTGTAGAGTTTGTCTCATTATGGACGTAAACATGTATCACTTGAGGGCACAGCCTTTGGAAACTTATTTTGAATCCATAATCGGAAATCTTTTGAGTACAATGGAACTGCCACCTTTTGTGTGTTTTGAATGTGCTGCACTTGTGAAGAAGTATTATCACTTCAGAGATCTTTGTTTAAGAGGACAAGCAATATTATACGGGATTCTGCACACAAGTGGAAAGATAACAAAGCAtgaaatacaacaaataaatagATCAAGCTTTCAATTGGCTTCCAACTTAACAGTTCATGAAATATTACAAGACAATGTATTTCACCATGTTTATGATGAAGACAGTTCTCTTGAAATTAAGACAGAACCCACTGTAGAGaatgataataattacaaatgtaACATGGAAGATAGTGTCAAAGAAGAAGAGTGTTTTGATGATCTTCCATTACTGCTTTCTACAGATGATGATGAGCCGTTATCACTGcataaaaacaataaagagaaaaaagctaaaaagaaagagaaaaagaaaagcaaaagagaaaagaaaaagaaacttgAGGTTAAATCAGATGAAATTGAGCAATTGGAGGATATTGatGCTTCAGATTATATAACAGAGATTGCAACAGAATTAAAAGAAATAGTTCCCCCAAAAGCGAAGAGAGGTCGGCCAAGAAAATCAGATGCACAGCAGGCCAAAACAGAACAGAAACCAAGGAGAACTACGAATACCGGTGGCGTTCTCGTCGATGATATAGACCTTGAGGAGTATGTCAGTGTTGTTAAATTATCTATTGAAGAACAAATGGAGGAAATAAATAAGAGGCAACAATCATCGAATTACCTGAACGCGCCGTATCAATGCAAGCTCTGCTACAAAGGTTTCATAGACACGCACACTTGGAAACATCATGTTGGCAAACATGACCCGAGCGCCGGCGACATAGAATGTCCAATCTGCAAGTTTCGTTTTAAAACGAAACGAACATTACAGAAGCACGCCACCAATCACGAGAAGAAGTACGCTTGTAAATCATGCCCCTACGTCTCGAAAACTGCaacTCAAGCTAAACAACATCAGCGTTGGCATAAAGGGGTCACATATAAATGTCAGTATTGTGATGAAGTTTCAACGAAATGGACGTCATATCTAAGCCATGTCCGTATCAAGCATCCTTCAGATTTCATTTGTGGTGTATGCGGTTACTCCTTCGTGAGTAAGCTCGGTCTCACCATGCACAAAACTATGATGCACAAAGACGTGGCTAGAAAAACCGaagctgatgatgatgatgataaagatGCTGGTCCATACTGTGAAGAGTGTGATGTTAAATTCATATCAGTGGAAGCATTCAAGAGGCACATGGTCACGTCTGTTAAACACACGCAAACCACTCACTTCAATAACGGATGTCGGGTCTGCGGCGAAACATTCAAAAATTCAGAAGAACTGAGGATACATCATCGCAAGGAACACGCCAGGAAACGTCCCAAAAACTATGGCAAGAAACCTACTAACATGACTTGGCCGGCTAAATGTGAACATTGCTCTGAAGAGATCCCGAATGCTCGCGACTACTGGACTCATTTCCGACGAGTGCACCCCGATAAGAACTACCCTATACAGAAGAACCATATATGTGACATCTGCGGCAAGAGCTTCAGGGGTAACGCTTTCCTGGTATATCACAAACGGACGCATTCCGAGGAGCGAGCGTTCAAATGTTCGACTTGTGGGAAGGCGTTTCACAACAGGACAAACCTGCACATGCACGAGAAGACCCACTCGGACGTGCGTCCGTACCCCTGCACCGTGTGTTACAAAGCATTCAAATGTAAAGGGGCTCTCGACAGACATTTCAGGTGTCACACGGGCGTGAAGCCGTATGAGTGCGAGGTTTGCGGGAAGGCATTCGGGCAGTCGAACAGCCGCAAGCTGCACGTACGTACTGTACACTTAAAGCAACCGGCGCCGTACGTCAGCCGGTCGCGTCTCCAACGGAAGAACAACTCGCACTCGCAGAAGGAACTCACACAATACTTCGTATACTAG
- Protein Sequence
- MEVVKVCRVCLIMDVNMYHLRAQPLETYFESIIGNLLSTMELPPFVCFECAALVKKYYHFRDLCLRGQAILYGILHTSGKITKHEIQQINRSSFQLASNLTVHEILQDNVFHHVYDEDSSLEIKTEPTVENDNNYKCNMEDSVKEEECFDDLPLLLSTDDDEPLSLHKNNKEKKAKKKEKKKSKREKKKKLEVKSDEIEQLEDIDASDYITEIATELKEIVPPKAKRGRPRKSDAQQAKTEQKPRRTTNTGGVLVDDIDLEEYVSVVKLSIEEQMEEINKRQQSSNYLNAPYQCKLCYKGFIDTHTWKHHVGKHDPSAGDIECPICKFRFKTKRTLQKHATNHEKKYACKSCPYVSKTATQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSDFICGVCGYSFVSKLGLTMHKTMMHKDVARKTEADDDDDKDAGPYCEECDVKFISVEAFKRHMVTSVKHTQTTHFNNGCRVCGETFKNSEELRIHHRKEHARKRPKNYGKKPTNMTWPAKCEHCSEEIPNARDYWTHFRRVHPDKNYPIQKNHICDICGKSFRGNAFLVYHKRTHSEERAFKCSTCGKAFHNRTNLHMHEKTHSDVRPYPCTVCYKAFKCKGALDRHFRCHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRSRLQRKNNSHSQKELTQYFVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00112728;
- 90% Identity
- -
- 80% Identity
- -