Sjap022555.2
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065321.1:2304127-2326386[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.25 27 6.7 3.2 1 23 299 321 299 321 0.91 2 17 0.0027 0.29 12.9 1.3 2 23 329 350 328 350 0.95 3 17 0.041 4.5 9.1 1.7 1 23 381 404 381 404 0.95 4 17 0.00067 0.074 14.7 0.5 1 23 408 431 408 431 0.95 5 17 0.0027 0.29 12.9 1.3 2 23 441 462 440 462 0.95 6 17 0.041 4.5 9.1 1.7 1 23 493 516 493 516 0.95 7 17 0.00067 0.074 14.7 0.5 1 23 520 543 520 543 0.95 8 17 0.0035 0.38 12.5 0.3 2 21 561 580 560 585 0.91 9 17 0.00019 0.021 16.5 0.8 3 23 595 615 595 615 0.98 10 17 0.17 18 7.2 0.5 2 23 635 657 634 657 0.97 11 17 2.1e-05 0.0023 19.5 0.7 2 23 669 690 669 690 0.97 12 17 6.7e-06 0.00073 21.1 2.3 1 23 696 718 696 718 0.99 13 17 0.37 40 6.1 3.1 1 21 724 744 724 745 0.94 14 17 8.9 9.7e+02 1.8 1.5 7 23 740 756 735 756 0.95 15 17 6.7e-06 0.00073 21.1 2.3 1 23 762 784 762 784 0.99 16 17 2 2.2e+02 3.8 5.3 1 21 790 810 790 812 0.93 17 17 0.00011 0.012 17.2 0.2 1 23 818 841 818 841 0.97
Sequence Information
- Coding Sequence
- ATGGAGGTGGTAAAAGTGTGTAGAATATGTCTAGTTATGGACGTAAACATGCACGACTTGCAGAGGCAGCCTTTggaaacttatttaaaaacattaataggAAACCCTCTGAGTGCATTTGAGTTACCACCATTTGCATGTTTTGAATGCTTTGAGCTGGTGAAAAAGTATTCTTACTTTAGAAATAAATGCTTAACAGGGCAAGCAACTTTATATGGAATTCTGCAATCAAATGGAaagATAACAAGGcaagaaatacaaaaaataaacagatCAAGCTCTCAACTGGCTTCTAAGTTAACTATTCATAAAATTACACAGGACAATGTAATTTACCATGTTCATGATGAAGACAGTTTCAATGTCAAGAGAGAACCTTCTGCTGAGGATGATAAACACaagtttaaatttgaaaatagtaTTAAAGAGGAAGTCTGTTTTGATAATCTTTCTTTACTTCTCACctctgatgatgatgatgatgaattagAAGAGAGTACTGAAGAAGAGTGTTTTGATGATTTTCCACTACTTTCTAGTGATGATGATGAATCATTGTCATTGCACACTAGCAATAAAGTGAAAAAAGCTAAAGTAAAAGAGAAGAAGAAAGTCAAGGATAAGAGTAAAAAAGATACTACTGATCCTTTGAAAGATATTAAAGTCAGAAGCTACATACAAGAGATTCCtatagaattaacaaaaatacttccACACAAAGTAAAAAGAGATCAGTCCATAAAACCTAAGAAACTACGAAGGAATGCTCATGCTCATACCGGTGTTAATATTGGTGAGCTAGAGGAATATGTTAATGTTGTAGAGTTATCTATTGAAGAACAAATGGAAGAGATAAAAAAAAGGCAACAATCATCGAACTACCTAAACGCGCCGTATCAATGCAAGCTCTGCTATAAAGGTTTCTTAAATACGCAAGCGTGGAAACATCACATCACCAAACATGACCCGAGTGCAGGTGATATAGAATGCCCGATATGCAAGTTTCGGTTTAAGACACACCGGCCCCTTCGCAATCACGCCGCGCGACACTCCACCAAATACGTTTGTAAAAAGTGCCCCTACGTCTCCAGATGCACCAATCAAGCGAGACGGCACGAAAGTTGGCACAAAGGTGTCACATATAAATGTCAGTACTGTGGTGAAGTATCAACGAAATGGACGTCACATTTAAGTCATGTCCGTATCAAGCACCCTTCAGAGTTCATTTGTGATTTATGCGGTTACTCCTTCGTGAGCAAGCTTGGTCTCAACAGTCACAAAAGTAGAATGCATAAAGACGTTGCtAGTGCAGGTGATATAGAATGCCCGATATGCAAGTTTCGGTTTAAGACACACCGGCCGCTTCGCAATCACGCCGCGCGACACTCCACGAAATACGTTTGTAAAAAGTGCCCCTACGTCTCCAGATGCACCAATCAAGCGAGAAGGCACGAAAGTTGGCACAAAGGTGTCACATATAAATGTCAGTACTGTGGTGAAGTATCAACGAAATGGACGTCACATTTAAGTCATGTCCGTATCAAGCACCCTTCAGAGTTCATTTGTGATTTATGCGGTTACTCCTTCGTGAGCAAGCTTGGTCTCAACAGTCACAAAAGTAGAATGCATAAAGACGTTGCtGAAAAAAACCAATCAGTTAATGATAACGAAGCTGATCTGTACTGCAAGGAGTGTGACGTCAAGTTTATATCAATGGAGGCGTTCCAGAGACACATGGTCACGTCTGTTAAGCACACACAAACAACTAACATTAAtaagGGATGTCGTTTATGCGgcgaaatattcaaaaattcaaagGAATTGAGGATCCATCGCAAAGTACACGCGAGAAAACTTCCCAAATTTTATGGCAAGAAACCAACTGACACATCTTGGCCAGTTAAATGTCAACAATGCTCAGAAGAAATCTCGAATGCTCGTGATTACTGGAACCATTTCCGGCGATCGCACCCCGATAAGGACTATCCTATTCAAAAGGATAACGTATGTGATATATGCGGCAAAAGCTTCAAGAACAGCTCTTACATGGTTTACCACAAAAGTACGCATTCCGAGGAGCGTGCGTACAAGTGTTCGACTTGTGGTAAAGCATTCCGTAATACAATAAACTTACACAACCACGAGAGGATTCACTCGGACGTGCGTCCGTACCCCTGCACCGtatgctataaagcatttaaATGTAAAGGGGCTCTAGACAGACATTTTAGaAACAGCTCTTACATGGTTTACCACAAAAGTACGCATTCCGAGGAGCGTGCGTACAAGTGTTCGACTTGTGGTAAAGCATTCCGTAATACAATAAACTTACACAACCACGAGAGGATTCACTCGGACGTGCGTCCGTACCCCTGCACCGtatgctataaagcatttaaATGTAAAGGGGCTCTAGACAGACATTTTAGaTGTCACACGGGCGTCAAGCCGTATGTATGCCAAGTTTGCGGAAAAGGATTCAGTCAGTCAAACGGTCGGAAGCTCCACATTAGCACAGTACATATGAAGCAACCTGCGCCCCCTCGATCGCGTCTTCAACGGAAGAACAAACCTTAA
- Protein Sequence
- MEVVKVCRICLVMDVNMHDLQRQPLETYLKTLIGNPLSAFELPPFACFECFELVKKYSYFRNKCLTGQATLYGILQSNGKITRQEIQKINRSSSQLASKLTIHKITQDNVIYHVHDEDSFNVKREPSAEDDKHKFKFENSIKEEVCFDNLSLLLTSDDDDDELEESTEEECFDDFPLLSSDDDESLSLHTSNKVKKAKVKEKKKVKDKSKKDTTDPLKDIKVRSYIQEIPIELTKILPHKVKRDQSIKPKKLRRNAHAHTGVNIGELEEYVNVVELSIEEQMEEIKKRQQSSNYLNAPYQCKLCYKGFLNTQAWKHHITKHDPSAGDIECPICKFRFKTHRPLRNHAARHSTKYVCKKCPYVSRCTNQARRHESWHKGVTYKCQYCGEVSTKWTSHLSHVRIKHPSEFICDLCGYSFVSKLGLNSHKSRMHKDVASAGDIECPICKFRFKTHRPLRNHAARHSTKYVCKKCPYVSRCTNQARRHESWHKGVTYKCQYCGEVSTKWTSHLSHVRIKHPSEFICDLCGYSFVSKLGLNSHKSRMHKDVAEKNQSVNDNEADLYCKECDVKFISMEAFQRHMVTSVKHTQTTNINKGCRLCGEIFKNSKELRIHRKVHARKLPKFYGKKPTDTSWPVKCQQCSEEISNARDYWNHFRRSHPDKDYPIQKDNVCDICGKSFKNSSYMVYHKSTHSEERAYKCSTCGKAFRNTINLHNHERIHSDVRPYPCTVCYKAFKCKGALDRHFRNSSYMVYHKSTHSEERAYKCSTCGKAFRNTINLHNHERIHSDVRPYPCTVCYKAFKCKGALDRHFRCHTGVKPYVCQVCGKGFSQSNGRKLHISTVHMKQPAPPRSRLQRKNKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -