Sjap032056.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065330.1:1898521-1900921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0074 0.81 11.5 9.4 1 23 146 169 146 169 0.97 2 18 0.00019 0.02 16.5 1.9 1 23 178 201 178 201 0.96 3 18 0.0024 0.26 13.0 0.4 2 23 214 236 214 236 0.97 4 18 0.0006 0.066 14.9 1.1 1 23 245 268 245 268 0.97 5 18 2.9e-05 0.0031 19.1 1.3 1 23 280 303 280 303 0.97 6 18 0.00016 0.018 16.7 1.1 2 23 333 355 332 355 0.97 7 18 0.00055 0.06 15.0 1.5 2 23 365 387 364 387 0.96 8 18 0.042 4.6 9.1 4.1 2 19 392 409 391 411 0.93 9 18 0.009 0.98 11.2 0.5 2 21 417 436 416 439 0.94 10 18 0.057 6.2 8.7 0.8 3 23 449 470 447 470 0.95 11 18 9.7e-05 0.011 17.4 2.2 1 23 475 498 475 498 0.97 12 18 0.0055 0.6 11.9 2.3 2 23 512 534 511 534 0.97 13 18 0.012 1.3 10.8 3.3 1 23 559 582 559 583 0.94 14 18 0.079 8.7 8.2 0.2 2 23 589 610 588 610 0.95 15 18 1.4 1.5e+02 4.3 2.5 3 23 618 638 616 638 0.93 16 18 7.9 8.7e+02 1.9 0.8 1 23 675 697 675 697 0.81 17 18 0.021 2.3 10.1 0.1 1 23 704 726 704 726 0.97 18 18 0.091 9.9 8.0 1.9 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGTCAATCAAAATAGAAGATATAAAAGTTGAAGATGTTGAAGCTGACCGCAAAGATCCAACTTCTTTCCTCCCTCAAGAGGAAATGTCTTatcatttaaaattgaaaaagaaaaaaaagaagaaaaagcaaGAGGATCCATTTAAAGATTTAGATGGAGAGACAGTAAATTTTCCCGCAATGCCAACATTAGCTTTGGATCCTGAAGTTACTATAAAAGTGGAAAATATAGAGGTTGAATTGGATTTTAAGGatTTCACAGATGGTAATGGTTTGTTAATGAATAATCCTGCAGATGAAGATAGTCAACCAGAGCCAGCTATAAAGATAGAAGATCAAACACATGAAGCAGTTCTCCTTACATTTGAGAATGTTGTCACAGACAAGGGTGTCCTTGGATACAAACCCAGAGTGAAAGAAGAACCCGGAACAATGCATAAATGTAAAGTGTGCCATTTAGTATTTAAGTCtaataaaactttacatatGCACCAGAAAAGAAAGCACaaaatttttagaaaatctTTCAAGCATATATGTGACTATTGTACAATGTCCTATGAATCGAAAAATAGCCTAATCGCTCATATGAAAAGAAAACATGGTCCGAATTCCCCACAGAATGATACGGAAGAACGAACATGTGAGATTTGTGCTCTAGTCTTTAAAGGGTCTGCTCGGTTGCGGATGCACATGAGAAGAAAACATGGTTCCTATAAAGATTCCTTCCAACACGTGTGCAATGATTGTGGTTTGACATATGACAAATATAGAAGTTTGGTTGTCCACATCCAAAGAAAGCATTCAGGAATAAAACCTCAAATTTCAAATCAGTGGTTCAACTGCCCATTCTGCCCGAAAGCTTTTACTAAACGAGAGACATATGCACGACATATACAAAGAAAGCATCAAGTAAATGAAGAAGATGGGGTTATAAGTGATAACAAACCTCCTGAAGAATTGGAAGGCGCAAGGAATGAACAAACAGGTGAAATAACTTGTAAACAATGCCCACTGATGTTTACATCCATTAATTACTTAAAGTTACACATGAGGAGAAAACATAATGCTTTAAAAGACGCCTTTAGACTTAAATGCAGAATATGTAACCTGTCTTATGACAAATTGGAAAGTTTAAAACGTCATGTGCGCAGAAAACACGACACAAGGTTACACTGTACAATctgtaataaacattttaacacaGCAGAACATTATGCAAGCCACTCCCATGCTAAGTTGGTTAAGGAATGTACCCTTTGCGGTTTAAtttttgcctctgaaggaggtCTGGCGAAACACTTAAGGTGCACACATAAAGTAGACACACCTAAAACTATATTTTGCAACATTTGCAATGCTGGATTCCATGATAAGCGTCAGTTGAAGCCGCATTTATTAAAAGTGCATTTAAAAGTGTCATACACATGTAAATTTtgcaacaaaatttttaaagcaAAAGAGAGTTACAAACGCCACATAATAGTTAAGCATCCAACAACTGCTAAAGAGGAAGTGAATACAGATATGCAGAAATGTGATAAATGCATAGAGACATTTAAAGATGAATTCGAGCTTTGTCGTCACATAAACAAAGTACATGCAAATGAGACAAACTCAAATGAAACAGAATGGTTGGAAGTAAAGAAAGAAGAGGTAGATTTGAAAGATTCATACCAGTGCACAAAATGTTCAGACACATACTCATCATGGACCCAGCTTAAGATGCATTACGAACAGAACCATCACATATTTTCCGAGACACAGTGTCAGATGTGTGGTGAGATCTTACCGTCAAACGAATTGCAAAAACACATAAAGATTAAACATGTGGACACTATCGAAATGAATTGCAAATACTGTGAGTTTAAAACACTATCCAAAAACAGTTTGACCCAACATACACTGAGGCATAAAAATGCAATGACAATACATTGTGATTTTAACGGTTGTCGATACAAGACTTTCTATGAAGGAGCTATGGAGAAACACAAACGTAAACACAAAGACTTGGGTGTTAAATTTCAGTGCACACAGTGTCCGTTCCAAAGTATGAATAAGTACATCTTGAAGTATCACGAGGAAGCTCATGCTACAGGGAAAAAACGGTACATGTGCGACCAGTGTGACTATGCTACAATTTTACCAGCGAACTTGGTTCAGCACAAATATAAGCATTCAACAGAGAAAAGGTTTAAGTGCGAAGTATGTCCATTTGCCACAAAGTACAATACATCACTACGATTTCACGTAAGAAAGAAACACTGTGATCTTCCTACaagttaa
- Protein Sequence
- MSIKIEDIKVEDVEADRKDPTSFLPQEEMSYHLKLKKKKKKKKQEDPFKDLDGETVNFPAMPTLALDPEVTIKVENIEVELDFKDFTDGNGLLMNNPADEDSQPEPAIKIEDQTHEAVLLTFENVVTDKGVLGYKPRVKEEPGTMHKCKVCHLVFKSNKTLHMHQKRKHKIFRKSFKHICDYCTMSYESKNSLIAHMKRKHGPNSPQNDTEERTCEICALVFKGSARLRMHMRRKHGSYKDSFQHVCNDCGLTYDKYRSLVVHIQRKHSGIKPQISNQWFNCPFCPKAFTKRETYARHIQRKHQVNEEDGVISDNKPPEELEGARNEQTGEITCKQCPLMFTSINYLKLHMRRKHNALKDAFRLKCRICNLSYDKLESLKRHVRRKHDTRLHCTICNKHFNTAEHYASHSHAKLVKECTLCGLIFASEGGLAKHLRCTHKVDTPKTIFCNICNAGFHDKRQLKPHLLKVHLKVSYTCKFCNKIFKAKESYKRHIIVKHPTTAKEEVNTDMQKCDKCIETFKDEFELCRHINKVHANETNSNETEWLEVKKEEVDLKDSYQCTKCSDTYSSWTQLKMHYEQNHHIFSETQCQMCGEILPSNELQKHIKIKHVDTIEMNCKYCEFKTLSKNSLTQHTLRHKNAMTIHCDFNGCRYKTFYEGAMEKHKRKHKDLGVKFQCTQCPFQSMNKYILKYHEEAHATGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114320;
- 90% Identity
- iTF_00114320;
- 80% Identity
- -