Sjap031746.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065329.1:10305820-10306929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.021 2.3 10.0 1.5 2 21 2 21 1 22 0.91 2 11 1.4e-05 0.0016 20.0 0.8 1 23 34 57 34 57 0.97 3 11 0.065 7.1 8.5 0.0 6 20 68 82 67 84 0.94 4 11 5.5e-05 0.006 18.2 1.5 1 23 95 118 95 118 0.98 5 11 6.9e-05 0.0075 17.9 0.9 6 23 129 146 127 146 0.96 6 11 4.5e-06 0.00049 21.6 1.7 2 23 159 181 158 181 0.96 7 11 0.00066 0.072 14.8 2.4 5 23 191 209 189 209 0.96 8 11 0.00021 0.023 16.4 0.5 2 23 244 266 243 266 0.97 9 11 0.011 1.2 10.9 1.7 5 23 276 294 274 294 0.95 10 11 0.00058 0.063 15.0 6.3 1 23 305 328 305 328 0.98 11 11 3.1e-05 0.0033 19.0 0.9 6 23 339 356 337 356 0.96
Sequence Information
- Coding Sequence
- ATGAAATGTATATATTGCAATGTAGATTTCAAACATAAATACAGATTGACTAACCATATGAAGTTATGTTGCACTGGTAGGCAGGATGaggaaattaaatatatatgtgacGTATGTGAGCGCGTCTATAAAACTAAACGATCTTTAGTAACACATATAAAAAAGACACATTATGAGTATGGGAGGACGTTTGAGTGTGCGTGTGGGAAGCAGTTCCCTTCACCGATACACTTGACTATACACAAGAGCTTGCGATGTTGTACCAATAGGAAAAATGAATTATACGAATGTAAACGCTGTGAGACGGTGTATAATTTGAAGAACAGTTTAACAAGGCATATGAAGAGAGCTCATTATGATTACGGGAGAACATTtgattgttggtgcgggaaacagtttcgTACACCGCAGTACTTACGCGAGCATATGAAGCGGCATGAGGACAAAATGAATGATAGAAATAATGATAATGTCCAATGTGACTATTGCCAAAAACAATTCAAAACAAAACACTACTTAATAGATCATATAAAAATCGTTCACtatgattatggtaaagtatttgaatgttggtgcgggaaacagttccgtacacCGATACACTTACGTCAGCATAAGAAACGGCACTCTGATGGTAAATTTAATGATACAAATAGTGACAAATTACACACATTGAATAACCATGTGATGCTATGTCGTACTGGTAAAGATGatgagaaaatgaaaaataaatgtgactcATGCGAGCGCGTCTATAAAAGTAAGCAAGCTTTAGCAGCACATATCAAAAAGAATCATTTTGACTATGGCAAAATGTTTGAGTGCTGGTGTGGGAAGCAGTTCCCTTCACCGATACACCTGACTGAACACAAGCACCGTCACCGGCATAGTACCAATGGGAAAAATGAATTATACAAATGTCATCATTGCGAGACCGTGTACAATACGAAACAGTATATAACAAAGCATATAAAGAGGTTGCACTATGATTATGGTAAAACGTTtgattgttggtgcgggaaacagttccgtacacCGCAGTACTTACGCGAGCATATGAGGCGGCACGATGACAaagtggaaaataaaaataatgacaaagTTCAATGA
- Protein Sequence
- MKCIYCNVDFKHKYRLTNHMKLCCTGRQDEEIKYICDVCERVYKTKRSLVTHIKKTHYEYGRTFECACGKQFPSPIHLTIHKSLRCCTNRKNELYECKRCETVYNLKNSLTRHMKRAHYDYGRTFDCWCGKQFRTPQYLREHMKRHEDKMNDRNNDNVQCDYCQKQFKTKHYLIDHIKIVHYDYGKVFECWCGKQFRTPIHLRQHKKRHSDGKFNDTNSDKLHTLNNHVMLCRTGKDDEKMKNKCDSCERVYKSKQALAAHIKKNHFDYGKMFECWCGKQFPSPIHLTEHKHRHRHSTNGKNELYKCHHCETVYNTKQYITKHIKRLHYDYGKTFDCWCGKQFRTPQYLREHMRRHDDKVENKNNDKVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -