Sjap010956.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Saturnia japonica
Gene Symbol
L
Assembly
GCA_033032175.1
Location
CM065311.1:8207225-8213560[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.5 1.6e+02 4.2 4.8 1 23 12 34 12 34 0.97
2 15 8.8e-06 0.00096 20.7 4.1 1 23 40 62 40 62 0.99
3 15 2.7e-05 0.003 19.1 0.1 1 23 68 90 68 90 0.98
4 15 0.00069 0.075 14.7 0.0 2 23 106 128 105 128 0.95
5 15 0.64 70 5.4 0.2 9 23 159 174 155 174 0.96
6 15 0.63 69 5.4 0.0 3 23 227 247 226 247 0.97
7 15 6.7e-05 0.0073 17.9 0.6 1 23 290 313 290 313 0.94
8 15 0.034 3.7 9.4 0.1 1 23 318 341 318 341 0.92
9 15 0.0022 0.24 13.1 0.4 1 23 399 423 399 424 0.96
10 15 0.00021 0.023 16.4 0.1 2 23 485 506 484 506 0.96
11 15 0.06 6.6 8.6 0.0 1 23 514 536 514 536 0.98
12 15 2.9 3.2e+02 3.3 2.5 2 23 544 565 543 566 0.94
13 15 0.15 16 7.4 0.4 1 23 640 662 640 662 0.94
14 15 0.0036 0.4 12.5 0.1 1 20 670 689 670 692 0.95
15 15 0.15 16 7.4 1.3 1 23 699 721 699 721 0.94

Sequence Information

Coding Sequence
ATGTTTTCGCAGACGCACTCAGACCAGATGCCGTTCCGCTGCGAGTTCTGTGCGCGGCTGTTCAAGCACAAGAGATCCCGCGACAGACATGTTAAACTGCACACCGGTGACCGCAAGTATCGATGTGCTCATTGCGAATCAGCTTTTTCAAGGAGTGACCACTTGAAGATACATATGAAAACACACGACAATCAAAAGCCGTTTCAGTGCACGGTGTGCAATCGTGGCTACAATACTGCTGCCGCTCTCACCTCTCACATGCAAGGCCACAAGCGCGACCGAGAGGGACGTGAAACCGAACGTCGACGACCTTTGCGCTGTTTGCGGTGTGGTGATGCCTTCCGACGTCCTGATCTATTGCAGGCACATATGGCGAGTGTGCATGGTGTTGACGCAGCAGCGCTCACTCCACCGAGACGAGTGGCGTCACAACCGCCTCCTACCCTTCTAGCCTGCATCTACTGTACTCGTGACACATTTACTAGCATGGACCAATTACAACTTCACGTGCGGACCGCACATTCGGCTCTTTTAAACGGTGAATCGCCCATGCAAATAGTAGAACAACCGGCTCCGACTGATCTAAGTAGACGAGGTTCGGAAGATGTAACTACAGCTAAACGACCACGATCAGGATCTGGAACGCCTCAGACTACATTGTCACCTAGCACACTACTGTGTAATCAGTGCGATGCAGCATTGCCTGATTTCGAAGCTTTTCGAGCTCATGTTAAGGCGCATTTAGAAGAAGGTAATGAGCTTGGTAGGTCGAGTCCAGCCCCGTGCGTGAACTGTGGCTCTACATTTGCCGATGCCGCTGCTTCTGAACGCTATCTTACAGCTCATTATTTAGCTGTATCTTGTGAATACACGTGTCATAGTTGTGCGCGGAGTTTCCCTTCTCCGGATGACTTGCAAAAACACCTTTTGGATCTGCATGCACATCATCTCTACCGGTGCTCTCTGTGCAAAGAAATATTCGATTCAAAAGTCGCAATACAGgTACATTTTGCAGTAGCTCATAGCGGCGAGAATAAAATATGGATGTGCCGGTCATGCGGCGGAAGTGCTGGAGCGCTACGGTCGGAGGCAGAGGGTGCGGCTCATGTGCGTTCTCGTCATGCAGCCGGGGTTGCGCGTTGTACTTGCGGAGCGCTGATGACGGGTCCACGACACGCTCGCCCTGCCCGGCCTTATCGATGTCCTGTACCGACTTGTACGGATACATTTGCCGTGCAATATCTATTAGAGAGACATATGCAGGCACATCACACATTGCCACGTCAGGTGTTAAATGGCGAGGTCAATAGAGTAAAGAGGGGAGAAAATAATAACAGCGGTGAAGGAATGGAAGGCACCTGCTCTCCTTCTAACACGTTGCCGGAAAATGCATCTAATATTGGAGCGGGAACGAGTGAGGAGAGGCGGCGGAAGAACGGCGCAGTAGCGCTACAGTGTGCATATTGTGGTGAACGAACACGCAGCCGAGCAGAGCTGGAAGCGCATACACGAGCACATTCCGGCGCGGCCGCAGCGCGACACAAGTGTCTCATTTGTGATGAGGTGCTACCCTCCGCGGCTGTTCTTGCTGAACACAAACTCACACATTGTAAGGTTGTGGCAGGAGACACGTGCTCACGCTGCCGTGCTCACCTTGCTTCTGAAGAGACGTTCTTAAACCACATGGCGAGACATCATCCAGCGTTACCCGCGCCTTGCGTGGTTTGCAGACAGACATTAGCTTCAGAGGCAGAAGCAAGACTCCATGCGCGTTTCCATCTTCGTCCGAATGAGGACGAACAGAGGTGTGCAATATGTCTGCGAGCGCTTCCAGAAAATGAAGCTGGTGAAGGAGCTCGTGCTTGTTCCGCTTGCTATGCTCGCCATGCTGCCCCTCGACCTCCACCTGCGACAGACCACGACTGCAAACTATGCAGACGGGTTTTGGGCTCGCCGACTAGATTGCAAGCGCATTTAATCGAGCATACCTTTGCAGGAATAGGTGCATTTACGTGTTACTTATGCTCGGCAGTATTCACAAGTGCAGCTGGCTTACAGCGACATCTACCAGAACATGCGACCGCGCCAAGACCTTATGACTGTGGCCGATGCGGCCATAAATTTTTCTTTAGAGCGGAACTGGATAACCACGCTTTTGTTCATTTAGAAGAAGCCGAAATAGCACAGAGAGCGTTTTATGAAGCCTACGCAAGAGGGGCGGCTTCTGCGTGGGCTGCGCTCGCGCCCACTGATCCGTCACCGACTATCTCGTCGGCACCTCCTCCGTCCGAGGTGAAGCGCGAACCTGAAATTAAGGAGGAACGCAACGACGAATACATTGAGGTTTCATCTCCTCCGCCCCCAGCGCCGCCTCCCACTGGACCCACTCCACCGCCAACTGTAAAACTAGAGAAGCCCGACGAAGACTGA
Protein Sequence
MFSQTHSDQMPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRETERRRPLRCLRCGDAFRRPDLLQAHMASVHGVDAAALTPPRRVASQPPPTLLACIYCTRDTFTSMDQLQLHVRTAHSALLNGESPMQIVEQPAPTDLSRRGSEDVTTAKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHVKAHLEEGNELGRSSPAPCVNCGSTFADAAASERYLTAHYLAVSCEYTCHSCARSFPSPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKIWMCRSCGGSAGALRSEAEGAAHVRSRHAAGVARCTCGALMTGPRHARPARPYRCPVPTCTDTFAVQYLLERHMQAHHTLPRQVLNGEVNRVKRGENNNSGEGMEGTCSPSNTLPENASNIGAGTSEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCSRCRAHLASEETFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRALPENEAGEGARACSACYARHAAPRPPPATDHDCKLCRRVLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHATAPRPYDCGRCGHKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPTDPSPTISSAPPPSEVKREPEIKEERNDEYIEVSSPPPPAPPPTGPTPPPTVKLEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00112844;
90% Identity
iTF_01312412;
80% Identity
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