Sjap026285.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- znf711
- Assembly
- GCA_033032175.1
- Location
- CM065324.1:5957496-5968208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0076 0.84 11.4 2.1 2 23 87 108 86 108 0.96 2 12 0.012 1.3 10.8 0.8 3 23 116 137 114 137 0.94 3 12 0.73 80 5.2 0.2 2 22 145 165 144 167 0.85 4 12 0.00086 0.094 14.4 6.7 1 23 173 195 173 195 0.97 5 12 1.8e-07 2e-05 26.0 1.6 3 23 203 223 202 223 0.99 6 12 0.00034 0.037 15.7 1.3 1 19 229 247 229 250 0.94 7 12 0.095 10 8.0 1.1 3 19 270 286 269 291 0.91 8 12 7.4e-06 0.00081 20.9 1.3 1 22 589 610 589 610 0.95 9 12 0.00012 0.013 17.1 3.3 1 23 618 641 618 641 0.93 10 12 0.042 4.6 9.1 0.3 1 23 649 672 649 672 0.93 11 12 0.002 0.22 13.3 1.9 1 23 678 702 678 702 0.95 12 12 5.9e-07 6.4e-05 24.4 0.5 1 21 708 728 708 729 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCAAGTTTACCATTTTGCAGCCTTCCAGTATGTACTACTACTACGTTACATACGTCACAAATCTTACTGAATTTTGTAGTCCTAATAGATTCGCAAGTATCTGATTTAAAGTCTCAAGAGTGCGGTTACAATGAGCTGCAGCACTCATTACCCTCGCACGGATCACTTTTGGGTCCGGACGATGTGCTTGAACAATTCTTGTCTGGCGACGAACCACTGGAAGAACCCGACTTGAATGGTCCGACGACACTGCATTGTGAAATTTGCAGGAAAAAATTTGATAATGCAAAGAAATATTACGGACATCTGCGTGTACATTCCAAAGATAATCTTTGGATATGTGATAAATGTCCAAATGAGAagttttcaacaaaacaacaattaatGAAACACAGTTTAACACACAAACCATTAGAAAGTGTATGGAGATGCCCACAATGCCCTATGGCTTTTGAAGCTTTATGGAGACTGCACCAACATCTTTTTGCCAAACATCTAGGTTATAGacCTCACAAATGTGATAAATGTGAAAAATCATTCCACAAGTTATCAGATTTAAAGAAGCACAAAAGTGTACATAATgATGAAAAGAAGCATGGCTGTACAGAATGTGATATGAGGTTCAAAGATAAGTCTAATTTAAAAAGACACATGTTAACACATAACAATGAAAAGCCATATTGTTGTCCAGGGTGTGGTAACCGTTTTAAACAGctGGCATCACTGAAGCGACACAATCAGAACTGTACTTTAAGTAAAACGATAGATCAACCCATAGATAAATCTGTCAGGAAAAATTACTGTAGGGTTTGTGGTCTGACATTCCAATATAAAAGTGCATTGCTTGAACATTGTGTGAGaGAACATACGAACAACCcaaaaaatgaaacaaataaagacgataaaataaacgaaattaaTAATGATGCTAACACAACAGTGGAAAATATTGTTGATGATATCCTCTCGGCTGAAGATGACTATATGACAATGTCTACACAAAAcgaattattaaatgtatacaaTCCACAAAATTTAGACAACAGTTCTGATAATTTGATGCCAATTGAGTTACTTAAAGAAATGAACCAATTACACACACTTGATGATGAACTATTCTATAATGATATAGATTTTGACAATTTTCAAGCAATCAATACAAACGACattgattataatattgataaaaatgcAGAAATACTTTGTGATTTTTCCGATGCTGGTAAGAGTTTAGATCAAGATATAATGAATGCACTGTATCATGTGAAAGCTGATCATTTGCCTGACGAGTTACTCAACTCCCCTGAAATTCTAAGTACACCAAATAATGTAAATGAACTTTGTGATCCAACAATTTCAGTAAATGAATGTGCTACTATATTTGAGACTGATGTAGATTTAGAGGCTAGTACTAATTTAGCAGCAAACTTAAATCAGCTGATTGGCGAGAATAGTGTACAGTATATTTCTACCGAAGATGATGatacatttataattagtttaaacAGTGAAATAGATGCAGAACAATTAACGGATATGTTAAATATAGGCGTAGAATTAATAGGcgataataataaagctttagaAGAACAAGTATCTGAAGCAGATAATACTGAAAGTGCTTCTGTTGGAAATGATACAGAACcaatagtattaaaaattgaACAGCCTGTCCTTAAAGTGGATAAAGATAAGGCTAATAATACTTCTGATGAAAAAGAGAATAAACTAAAAACGACAGAGAAAAAGCGAGTATTGTATGTTTGTCGAAAGTGCAATAAGGTGTTCACTAAAAAGGATAACTACAAGTCTCATATGGCAACATATCAGCCATCTTTGCGTCGGCACAGTTGTAGGGTGTGCGGCAAGAGATTTGCTTATCGATCTACATTGAACAAGCATGTGTGCGCTGCGCACACACCGCGCGTTTATCCTGCGCATGCTTGCAAACTTTGTCCTAAGCAATACAGGGCTGCCTGGATGCTAAGAGAACACGTGGATCGAGATCACAACGGACTGACTCCGCATGTTTGCGAAGTTAAAGGATGTGGCAAGAAGTTCTTCAAAAAATACGATCTCGTGATTCATAACagGTACCACACGGGAGAGCGGCCGTTCTCGTGTGAAATTTGCAAACGTTCTTTTCCACAAGCATCGCACCTCAGGAGGCATATTCGAGCTGTTGATTGTACTAAATAG
- Protein Sequence
- MEASLPFCSLPVCTTTTLHTSQILLNFVVLIDSQVSDLKSQECGYNELQHSLPSHGSLLGPDDVLEQFLSGDEPLEEPDLNGPTTLHCEICRKKFDNAKKYYGHLRVHSKDNLWICDKCPNEKFSTKQQLMKHSLTHKPLESVWRCPQCPMAFEALWRLHQHLFAKHLGYRPHKCDKCEKSFHKLSDLKKHKSVHNDEKKHGCTECDMRFKDKSNLKRHMLTHNNEKPYCCPGCGNRFKQLASLKRHNQNCTLSKTIDQPIDKSVRKNYCRVCGLTFQYKSALLEHCVREHTNNPKNETNKDDKINEINNDANTTVENIVDDILSAEDDYMTMSTQNELLNVYNPQNLDNSSDNLMPIELLKEMNQLHTLDDELFYNDIDFDNFQAINTNDIDYNIDKNAEILCDFSDAGKSLDQDIMNALYHVKADHLPDELLNSPEILSTPNNVNELCDPTISVNECATIFETDVDLEASTNLAANLNQLIGENSVQYISTEDDDTFIISLNSEIDAEQLTDMLNIGVELIGDNNKALEEQVSEADNTESASVGNDTEPIVLKIEQPVLKVDKDKANNTSDEKENKLKTTEKKRVLYVCRKCNKVFTKKDNYKSHMATYQPSLRRHSCRVCGKRFAYRSTLNKHVCAAHTPRVYPAHACKLCPKQYRAAWMLREHVDRDHNGLTPHVCEVKGCGKKFFKKYDLVIHNRYHTGERPFSCEICKRSFPQASHLRRHIRAVDCTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114310;
- 90% Identity
- -
- 80% Identity
- -