Sjap003959.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065306.1:5046905-5071585[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.059 6.5 8.6 7.4 1 23 138 160 138 160 0.98 2 11 1.4e-06 0.00016 23.2 0.4 1 23 166 188 166 188 0.99 3 11 1.9e-05 0.002 19.6 2.0 1 23 194 217 194 217 0.95 4 11 0.0017 0.18 13.5 4.3 1 21 223 243 223 245 0.95 5 11 7.4e-05 0.0081 17.8 2.8 1 23 251 273 251 273 0.99 6 11 3.6e-06 0.00039 21.9 3.9 1 23 279 301 279 301 0.98 7 11 0.00097 0.11 14.3 0.6 1 23 309 332 309 332 0.97 8 11 0.023 2.5 9.9 4.9 2 23 339 360 338 360 0.96 9 11 0.0075 0.82 11.4 0.4 1 23 366 388 366 388 0.97 10 11 0.0028 0.31 12.8 5.7 1 23 394 417 394 417 0.96 11 11 2.1e-06 0.00023 22.6 1.3 1 23 431 453 431 453 0.97
Sequence Information
- Coding Sequence
- ATGAATGGTGAAGAGGAAAACGAAAGTGGTGTAACATACTATATTAATGAAGAAGGACAGTACTTTCAGGAGGCTGGTGATAATCAAAATGTTGTTTCACTACAATCCCAGGGTATTGGGGGACAAGAACAAAATATTCTAGTTGAAACAAATAGCGACAGTTATCAGACAGTAACCGAGGTACCATCAGACACAAATAGCGGTGAGGTCAGCGATATCCTGGTCGTTCAAGAAAATAACAAGCCGCTCGTCAATACTGATATTAAAATGGACCAGgatgGAGATAAAGCTAATAACGGTGTCATATACAATGTCGAAGAAAAAGGAGCTGAAGAGCAATCTAAAGAAGAGGAATCTGAAGGCAAACCGAACACGCAATCTGCGAAACGTACCAAATGGCTAGAGTCAAAGTTCACTTGCAAGCTCTGCAATTGCACCCGTCATCGACTGTATTTGTTACTGCGACATATGAAGTCTCATTCGGAGGATCGGCCATACAAATGCGGTGTGTGTGACCGTGGCTTCAAAACCTCAGTGACGTTACAAAACCATCTTAATATACACTACGGCATCAAGTCTCATGTTTGTAAATACTGCAGTAGACCATTCACCACATCAGGTCAATTGGTAAGACATGTCAACTATAGGCATACGCACAAGAAGTCGCACAAGTGCACCGAATGCGACTATGCTTCCGTCGAGCAATCGAAACTTCGGCGCCATATGAGATGCCATACTGGAGAGAGACCCTATCAGTGTCCGCATTGTACGTACGCGTCCGCGGACACGTTCAAGTTGAAACGTCATTTGAGGACCCACACTGGTGAGAAACCTTACAAGTGTGAAGACTGCAACATGTGCTTCACTCAGTCGAATTCACTGAAGGCACATAGGCTTAAACACAATGTTGCCGAGAAACCGGTTTACGCGTGCGAAATATGCTCCGCTAAGTGCGGCCGCAAGGTCGATTTACGCATCCACATAAAGAGGTTGCACACGTCCGACAAGCCGCTGAAATGCAAACGATGCGGAAAGTTCTTCCCAGATAGATATTCCTGCAAAATCCATAACAAgACTCATGCTGGTGAGAAATGCTTTAAATGCGGAATATGCCCATACGCGTCGACTACGTTACAGCGACTCCAGTCTCACACGTTGCAACATACTTATTTGAAGCCATTCGTATGTGACCATTGCGATCAGTCCTTCagATGTAAACAACTTCTTCGTCGGCATCTAAACTTATACCATAACCCCGACTACGTGCCAAACCCACCGAAGGAGAAGACGCACAGTTGTCAGGAATGCAAGAAGACTTTCGCCTACAAAGGCAACCTGATTCGGCACCTAGCAGTCCACGACCCCACCAGGGACGGGCTCTGTAATTGA
- Protein Sequence
- MNGEEENESGVTYYINEEGQYFQEAGDNQNVVSLQSQGIGGQEQNILVETNSDSYQTVTEVPSDTNSGEVSDILVVQENNKPLVNTDIKMDQDGDKANNGVIYNVEEKGAEEQSKEEESEGKPNTQSAKRTKWLESKFTCKLCNCTRHRLYLLLRHMKSHSEDRPYKCGVCDRGFKTSVTLQNHLNIHYGIKSHVCKYCSRPFTTSGQLVRHVNYRHTHKKSHKCTECDYASVEQSKLRRHMRCHTGERPYQCPHCTYASADTFKLKRHLRTHTGEKPYKCEDCNMCFTQSNSLKAHRLKHNVAEKPVYACEICSAKCGRKVDLRIHIKRLHTSDKPLKCKRCGKFFPDRYSCKIHNKTHAGEKCFKCGICPYASTTLQRLQSHTLQHTYLKPFVCDHCDQSFRCKQLLRRHLNLYHNPDYVPNPPKEKTHSCQECKKTFAYKGNLIRHLAVHDPTRDGLCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -