Sjap015313.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- RE2
- Assembly
- GCA_033032175.1
- Location
- CM065314.1:18467957-18482193[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.19 21 7.0 0.2 1 23 312 334 312 334 0.97 2 17 0.012 1.3 10.8 0.5 2 23 341 363 340 363 0.95 3 17 0.0022 0.24 13.2 4.3 2 23 370 391 370 391 0.98 4 17 4.9e-07 5.4e-05 24.6 0.2 1 23 397 419 397 419 0.98 5 17 0.0025 0.27 13.0 0.7 1 23 425 447 425 447 0.99 6 17 3.1e-06 0.00034 22.1 2.6 1 23 454 476 454 476 0.99 7 17 0.0012 0.13 13.9 0.4 1 23 482 505 482 505 0.97 8 17 0.004 0.44 12.3 1.5 1 23 511 534 511 534 0.93 9 17 0.00094 0.1 14.3 2.6 1 23 539 562 539 562 0.96 10 17 0.0016 0.17 13.6 0.5 1 23 567 590 567 590 0.88 11 17 0.087 9.5 8.1 1.1 2 21 594 613 593 614 0.94 12 17 0.3 33 6.4 1.2 2 23 618 640 617 640 0.91 13 17 0.13 14 7.5 2.0 2 23 649 670 649 670 0.95 14 17 0.00056 0.061 15.0 3.6 1 23 676 699 676 699 0.98 15 17 0.0033 0.37 12.6 2.0 2 21 704 723 703 724 0.93 16 17 0.27 29 6.6 0.4 1 23 731 753 731 753 0.96 17 17 0.00048 0.052 15.2 0.8 1 23 759 782 759 782 0.95
Sequence Information
- Coding Sequence
- ATGGCGACTCATATGTTGAAGTTAAAAAAGGTGTGGTACCGATTAAAACAGGAAATGTCAAAAGAGAAAAAAGTGAATTCGGCTGATATGGATGCTGATCGTGAAAATTGGTACGTAGACAATGGGGCTACAAATCATGTTACAATGCCGGGTTTCTTTTTCAAGATTTTGAGTATTTCAGTGAAGCTCACACAAGACAAAGCTATGAGGCCTAGAGAACGCATGCACACTGATGTCTGTGGTCCGTTTCCAATGTCATCTTCTAAGTTCCGATACTTTGTACTGTTTAAGGATGAATACACTCGTTACCGCTACGTATATTGTCTTCGAGAAAAGTCAGTATTATCTGAAGCGCTAAAACAAATTTTGGCTGAAGCTAAGATAGCAGGACATCAAGTCAAAGAGTTGTTGAGTGATAACGGTGGAGAATTTAATAATCAACAAGTACGGACAGTTTTGATGGAACAAGGTATTAAACAAAGACTGGTGGTGCCTTATACACAGGAACAAAACGGTGGTAGTGAACGAGAAAATGATATAGTTATCGACAGCAATATTGTTAATGATCAGGATAATTCATTTGATAGAAAAGATATTCATGCTGTgaataatgaatatgatgatGTACTTGATGAAGCTAGGAGTTGTAATTCAGAAGAGGATACTGAATTAGGGGGAGAAATGGAAGAAATTAATGAAGATCAAAGAAAATTAGATGATGATTATGTAGGAGATGTTCTTCTAGATGAGGATGATGCAAGTAAATCtcattgtaaatatttagaTGTTGAAAGAAAATTTAACATAGCACCGAAATTGAAAGCTGGTTTAGTGTATAAAGAAAAGTCTAAACATAGAAAGAAGGGGAAAAAAGGGAACCGTTCCAACAATGCTCGATTGAAAGTATATGAAGAGGAAGATCCCAACGGTGACTATGTTTGTCCAGTATGTGCAAATAAATACAACCAAAAGCTCAAGCTCTTAGGACACTTATCCAGTCACTGTAATAGCATGGATTTGAAATGCGTACTATGCAATAAGAAGTTCTCCCAAGTGATCGCCGTAAAGCTACATCTGATGAGAACACATTCAGGAATAAAAGATGAGAAATGTAGTTATTgcgataaagtatttttttcccGTTGTAGCGTTAAACTTCACGAGAGAACCCACACTGGTCACAGGCCTTACGCTTGTAAATACTGCGAAAAACCTTTCAATGACCCGTCTGCGTTGAGGCGTCACGAGAGGATCCACGAAGGCGATAAACGTTACAAATGTCAGCACTGTATTAAAGCGTTCACTGACGCTGGCGCCGCTTTAAGACACCGCCTGACCCACGTGAACAGCGGTCGAATCTACGAATGTAAAAAATGCGACAAAAAATTCACAACGATAATGTATCTGAAAAGCCACATGAAAGTGCATCGTTTTGAAAAGAACTATCAGTGTGATCTATGCTCGAAATGGTTCGCAACGaaaccatatttaaaaatacacatcTTTACAGTGCATATTAAACATAATAGGTATGAATGTGACGAATGCGGTAAGAAGTTCCATATCAAGAATAGATTAACGGCGCATTTTGAGATCACACATAGCAACACTTATTACCATTGCGGTGAGTGCGGTAAGAAATGCAAAACAAACATAGGTTTGTGGCAACATAAGAAAATTGTTCACGGCAGCCGTCAATTCCTATGCAACGACTGTCCCAATCAGTACACGACGAAATCTGAACTATCCCGTCATGTTGTAAACAATCACCTCAATGTTAAATGCGAACAATGCTCCGGTCATTTCCCATCCAACACCATGTTAGAGAAACACAAAAAGAAAGGCTGCATTAAATGTATTAAATGTAACAAATTTTTCTCAAACGCTACACGAAGAAATCAACATTACCAAGTAGCCCATTCAGAAAAAAGTGTCAAACGTGAGAAATGCGATATTTGCAACAAGTACTACAGACTACAAACATTGAGCAAACACCGCGCAAAGTTTCACAGCGATGTCAAGGAATACCAATGTGATCACTGCAAACAATTTTTTCCTATGAAGGAGACATTAAGATATCATATTATGAGACAACATATGCTTGCGCTTTACTGCGACAAGTGCCACAAACCGTTCTACACCGAATCCCAGTTCGCGAGTCATAAGAAAAAGGTTTGTCTAATTAAACTATATCCCTGTAGTATATGTTTAAGAGAACACACTTCTTTGAGTGGTTTGAAATCACACCTGGTTGTCCATTGTGATGATTTTAATTACGTGTGCGATATTTGCAATGACAAGTTTAAGCGTGAGGCATCGTTAAAAAGACATTTTAAACTTGTTCATGGGATTGTATGA
- Protein Sequence
- MATHMLKLKKVWYRLKQEMSKEKKVNSADMDADRENWYVDNGATNHVTMPGFFFKILSISVKLTQDKAMRPRERMHTDVCGPFPMSSSKFRYFVLFKDEYTRYRYVYCLREKSVLSEALKQILAEAKIAGHQVKELLSDNGGEFNNQQVRTVLMEQGIKQRLVVPYTQEQNGGSERENDIVIDSNIVNDQDNSFDRKDIHAVNNEYDDVLDEARSCNSEEDTELGGEMEEINEDQRKLDDDYVGDVLLDEDDASKSHCKYLDVERKFNIAPKLKAGLVYKEKSKHRKKGKKGNRSNNARLKVYEEEDPNGDYVCPVCANKYNQKLKLLGHLSSHCNSMDLKCVLCNKKFSQVIAVKLHLMRTHSGIKDEKCSYCDKVFFSRCSVKLHERTHTGHRPYACKYCEKPFNDPSALRRHERIHEGDKRYKCQHCIKAFTDAGAALRHRLTHVNSGRIYECKKCDKKFTTIMYLKSHMKVHRFEKNYQCDLCSKWFATKPYLKIHIFTVHIKHNRYECDECGKKFHIKNRLTAHFEITHSNTYYHCGECGKKCKTNIGLWQHKKIVHGSRQFLCNDCPNQYTTKSELSRHVVNNHLNVKCEQCSGHFPSNTMLEKHKKKGCIKCIKCNKFFSNATRRNQHYQVAHSEKSVKREKCDICNKYYRLQTLSKHRAKFHSDVKEYQCDHCKQFFPMKETLRYHIMRQHMLALYCDKCHKPFYTESQFASHKKKVCLIKLYPCSICLREHTSLSGLKSHLVVHCDDFNYVCDICNDKFKREASLKRHFKLVHGIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -