Sjap030949.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065329.1:2379475-2386476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.21 23 6.9 0.1 1 21 63 83 63 86 0.90 2 18 0.0021 0.23 13.2 0.1 2 23 113 135 112 135 0.96 3 18 0.011 1.3 10.9 2.2 2 23 158 179 157 179 0.97 4 18 0.005 0.54 12.0 0.0 1 23 183 205 183 205 0.96 5 18 0.019 2.1 10.2 0.5 1 23 210 232 210 232 0.96 6 18 0.017 1.9 10.3 3.3 1 23 240 263 240 263 0.95 7 18 8e-05 0.0088 17.7 2.1 1 23 270 293 270 293 0.98 8 18 0.00097 0.11 14.3 2.4 1 23 299 321 299 321 0.95 9 18 0.00092 0.1 14.3 4.9 1 23 395 418 395 418 0.90 10 18 5.3 5.7e+02 2.5 1.3 2 23 444 466 443 466 0.90 11 18 0.0052 0.56 12.0 2.6 1 23 488 510 488 510 0.98 12 18 0.00012 0.013 17.1 0.2 1 23 514 536 514 536 0.98 13 18 0.00032 0.035 15.8 3.4 1 23 541 563 541 563 0.98 14 18 1.1 1.2e+02 4.6 4.2 1 23 569 592 569 592 0.95 15 18 0.00064 0.07 14.8 2.5 1 23 599 622 599 622 0.97 16 18 0.00015 0.016 16.8 3.8 1 23 628 650 628 650 0.98 17 18 2.8e-05 0.003 19.1 1.3 1 23 656 678 656 678 0.99 18 18 5.9e-05 0.0065 18.1 3.7 1 23 684 707 684 707 0.97
Sequence Information
- Coding Sequence
- ATGTTAGCTAGTGCCCATCATAATAATATCGTCGACATAAAAGAAGTTGAACTGGATACGAAAAAAGCAAAAAACACTGAAAATAAATTGCAGCCTAAATTTGAGATAGCattacatagaaataatataagGGAAATTTTATTATCCTCCAATGCTACACCGATTCGAAGATATGGAGGTATAGGGTACACTTGTGCATTCTGCGATAACCAGTACCCAGAACCTGGAGAACTCCGGCAGCACACTGTCGACACCCATACAGACATATCTCGGGCCAAGTTCATGACGAACGACAACCTACATCATTACTTAGTAAAACTTGATATAACAGCCCTCCGTTGCAAACTTTGCGACATCAGCATCTCCACTCTAGATGATCTGATGGATCACCTAAAAATCGTTCATGAGCGAAAGatattcaaaaatatcaaaagtagAATTTTGCCATTCAGATTTGACAGCGAGATTATGCGGTGCGCTATTTGCGAGCACGTATTCAACACGTTCAAAAAGCTGATGGAACACACGAGCACCCACTTCAGGAACTTCATCTGCGAAGTGTGCGACGCCGGTTTCGTTAACCAAAACGCTCTAAAAGGGCATTCGTTGAGCCATGAAACGGGTGACTTCGTTTGCTCGTACTGTCCTAAAGTACTCAGCAACGTGAGACAGAAGTCCAATCATGAAAAAATACACAGGCACGTGGACAATAAGCAGTACAAATGCGGATATTGTAACGAAGCATTTAAAACTTGTAGGAAGAAAGAGATGCACTTAAATCAGGTACATGCAGTACCGCCTAACACGTATAAGTGCCAAGCTTGCGACAAAACCTTTACGACAAGAAAAGTTTTTCGGGTTCACATAAAGAGAGATCATTTGATGGAGAGACACCACAAGTGTATTGTCTGCGAGAAGAGCTTCTTCAGGTCTGAGCAGTTGAAGGACCATATGGTACGGCACACCGGACTCAGGGAGTTCGAGTGTGGTAAACTACAAGTCAGAAATACCAGGAAAAAAATTGAGGTAATTTTTATAGATCGGAAGGATAAAACTGAAGAAGAAGACAAGGCAAAACCTAAGCTCGTGTTTTTAAGAAAAGGCGGGAAacatcttattaacattatagagattttaaaaTGCACAAACGCGACTCCAATCGGAAGGTACCACGTGATAGGATTCTCCTGCTGTTACTGCAAAGAGAAGTTCAAACGTCCGGAGGAATTGAAGAAACACACGTTTGCGAGGCACGATGACGTTACCCGAGCCAGTTTCATGAATAAATCATTGCGTGAATTCAACGTGAAACTTGACATAACCTCGCTGAAATGCAAACTGTGCGATTGCGACATCAGCACAATCGAACATGCGATCGAACACCTCAAAGAAATGCACGCTAAAAACATGACAAGCAACATCGAGAACCATATAATTCCGTTTAAATTTGATAGCGATATATTCAAATGCTGCATTTGTTCGACAGAGTTCAGTAAGTACAAACCGCTTCTCCTTCATATGAACGTTCATTATAGGAACTACGAATGCGTTATTTGCGGAGCTGGATTCATTAACGCGCATACGCTGAACAATCATAAACAGGTCCACGAATCGGGCGAGTTTAAATGCGAAATCTGTCACAAAGTATTCAGTAGTAACCAGAAGAGGAAAGTACATGAAAAAATCCATACAGATGCCAATTGCCACAAGTGCCCTTACTGTATAGAACGGTTCTGCAATAATAAGTATAAAGATGATCATATGGCGAAAGTTCACGGTGTGCCACTCCCGACTTACAGCTGCAAGGCTTGCGATAAAACCTTTAATGATAGTAGACGTTACAATACGCATTTAAAACGTGATCACCTAATGGAGAAGCCACATAAGTGCAAATTGTGTAGCAAAGCGTTTTTTTCTTCGAAGACGTTGAGGGATCATATGATTTCGCATTCAGGGGAAAGAAAGTTTCAGTGTGAAGTGTGTCGGAAGTCGTATGGAATGAAGAAGACTCTGAGAGAGCATATGCGGATACATAACAACGATCGCAGATTTAAATGTGAAATTTGCGCTCAAACCTTTGTACAGAAGTGCAGTTTGAGGTCGCATATGAGGAATAAACATGGGTCTTTGACATGA
- Protein Sequence
- MLASAHHNNIVDIKEVELDTKKAKNTENKLQPKFEIALHRNNIREILLSSNATPIRRYGGIGYTCAFCDNQYPEPGELRQHTVDTHTDISRAKFMTNDNLHHYLVKLDITALRCKLCDISISTLDDLMDHLKIVHERKIFKNIKSRILPFRFDSEIMRCAICEHVFNTFKKLMEHTSTHFRNFICEVCDAGFVNQNALKGHSLSHETGDFVCSYCPKVLSNVRQKSNHEKIHRHVDNKQYKCGYCNEAFKTCRKKEMHLNQVHAVPPNTYKCQACDKTFTTRKVFRVHIKRDHLMERHHKCIVCEKSFFRSEQLKDHMVRHTGLREFECGKLQVRNTRKKIEVIFIDRKDKTEEEDKAKPKLVFLRKGGKHLINIIEILKCTNATPIGRYHVIGFSCCYCKEKFKRPEELKKHTFARHDDVTRASFMNKSLREFNVKLDITSLKCKLCDCDISTIEHAIEHLKEMHAKNMTSNIENHIIPFKFDSDIFKCCICSTEFSKYKPLLLHMNVHYRNYECVICGAGFINAHTLNNHKQVHESGEFKCEICHKVFSSNQKRKVHEKIHTDANCHKCPYCIERFCNNKYKDDHMAKVHGVPLPTYSCKACDKTFNDSRRYNTHLKRDHLMEKPHKCKLCSKAFFSSKTLRDHMISHSGERKFQCEVCRKSYGMKKTLREHMRIHNNDRRFKCEICAQTFVQKCSLRSHMRNKHGSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -