Sjap030930.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065329.1:2255265-2259132[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0015 0.17 13.6 0.7 1 23 30 52 30 52 0.97 2 28 0.0057 0.62 11.8 1.3 2 23 123 145 122 145 0.95 3 28 0.025 2.7 9.8 6.4 1 23 150 173 150 173 0.95 4 28 0.0013 0.14 13.8 2.8 1 23 177 200 177 200 0.97 5 28 0.0052 0.57 11.9 1.0 2 23 203 225 202 225 0.96 6 28 1.6 1.7e+02 4.1 0.3 2 19 231 248 231 250 0.93 7 28 0.0029 0.31 12.8 3.1 1 21 300 320 300 323 0.90 8 28 0.92 1e+02 4.9 0.2 2 23 352 374 351 374 0.93 9 28 0.00023 0.026 16.2 0.4 1 23 396 419 396 419 0.96 10 28 4.3e-06 0.00047 21.7 0.1 1 23 424 447 424 447 0.95 11 28 0.003 0.33 12.7 1.6 5 23 455 474 452 474 0.93 12 28 0.00019 0.021 16.4 1.5 2 23 480 502 479 502 0.95 13 28 0.00039 0.043 15.5 3.5 1 23 506 529 506 529 0.97 14 28 0.018 2 10.2 0.5 2 23 536 557 535 557 0.96 15 28 0.00029 0.032 15.9 3.2 1 23 600 622 600 622 0.96 16 28 0.048 5.3 8.9 0.8 1 23 694 717 694 717 0.96 17 28 0.00015 0.017 16.8 0.5 1 23 722 745 722 745 0.96 18 28 0.06 6.6 8.6 3.3 1 23 750 772 750 772 0.98 19 28 1.3e-05 0.0014 20.1 1.2 2 23 775 797 775 797 0.97 20 28 0.055 6 8.7 1.4 1 21 803 823 803 824 0.94 21 28 0.44 48 5.9 1.0 1 23 876 899 876 899 0.95 22 28 1.3e-05 0.0014 20.1 0.2 2 23 972 994 971 994 0.96 23 28 5.8e-05 0.0064 18.1 0.3 3 23 1001 1022 1000 1022 0.94 24 28 0.03 3.3 9.6 7.5 2 23 1027 1048 1026 1049 0.93 25 28 0.0023 0.25 13.1 4.0 1 23 1054 1077 1054 1077 0.97 26 28 3.1e-05 0.0034 19.0 4.2 1 23 1081 1104 1081 1104 0.97 27 28 0.0005 0.055 15.1 0.3 2 23 1111 1132 1110 1132 0.96 28 28 0.00016 0.018 16.7 0.4 1 23 1138 1160 1138 1160 0.97
Sequence Information
- Coding Sequence
- ATGAACAGTGCTAATTACTACAGAAGAAGGAATCTACAAATACTGTTCAACAATACCACGTTGATACCGTTTAAATGGCGTATGAAGTACATGTGTTTTTATTGCGGACGCGATTTAGGAGACTATAGTGATCTCAGAAAGCATACTAAGGGCCACGGGGATTGTTCTGACAGCGATAGGGCTATCAGACTGGTTAAAGCTCCCGATAGTGAGGTCAAAGTTGACGTTTCAAATTTAACTTGTGAGATATGCATGACGCTCTGCGAAAACTTTGATGAAATCGTTTCACATTTAATCGTGAAACACAATTTGCCTTATAATAAAGACGTCGATCTTATGATCACCACGTACAGATTGTCTGATCTTAAATGTCTCTCTTGCGAACGCAGCTTTAGGTATTTCCGCCAACTCGTCTCTCATATGAATAACGAACATCCGATTAACTGTTTTCTCTGTCATGAGTGTGAGCATACCTTTAATAAGAAGAGAGATCTTGACCACCACGTTAGAGTATATCATAGGAAGGAATATTCTTGTCTGAAATGTTTAATGAGTTTCGCCACAAACTCTGAATTCCAGCATCATCGTCGGAATGCGCACATTTCCACGTGTAACATCTGTTTTAAAACATTCTCTTCGGAGGTACAAAGGTTGGGGCACATGAAACGTGATCACGATACAGATGGCGCTGAATGCGGGTTTTGTCACAAAGTTATGACCACGAAACAAGGTTTCCTACGCCACGCGGCGCAATGCACAGTCAAAGAGCACAAACATTCCGAAAGTATAGTTGTAGAAGACGACGATAGGAAACAGTCTGTCAAAGAGATTAGAAACGATATCGCTTGTGTACTGAATAAGTCTACCGCATTGCCTTTTAAGTATTTCATGAACCGGTTTAGGTGTTTCTACTGTTCGAAAGACTTCCCGCGATGTGATTCTTTGAAACAGCACACTGTCGCTGAACACCCTCATTGCGATATCACCTTTAAATCTATGAGGCTTCGTAACAGATATGAAGGGATGCAGATCAAAGTGGACATCTCCAGTCTGTCTTGCAAGCTTTGCTTCGCAACTTTAGAAGACTTGGACAGTTTGTTCGAACATTTGACATCAGAACATAAGTCCCGTCTCGACAGATCCGTATGTGAAAATATGCAGGCGTTCAAACTGATCGAGGATAATTTCCCGTGCCCGTTTTGCGGTGAAGTGTACAGATATTTCAGCTTGCTCTTGAGGCATGTCAGTAGAACTCATACGGATAATAAGTTTATATGCACGTACTGTGGTAAACCATTCAGAACAAATCCAAGCTTAAGGGCGCACGTTGTGACTTGGCATAACTTTGGCAGACATAAATGCGACTGTGGGTTGATGTTCACCACGAACAATAACCTTAAGATGCATATGGGGAGAGCACACGGCACGAAGGTTGTCCAGTGTACCGAATGCCAGGAGAAATTCACAACGCATTACTGGATGAAGAGGCACATGTTGGAAGCGCACGGCGCCGGTCACAAGTGTTCCCACTGTGGCAGAGTGTACGTGAAGAACTCTGCAATGGTGAACCACGTCAGGCGGTTCCACCTGAAGGAAAGAAACGTCGAGTGTTCCGTCTGCTTTGAGAGGTTCTTCGACGCGCAACGATTGAAGACGCACATGGTGAAGCATGTTGGAGAAAGGAACTTTCATTATGAATACGGGCCCTACGAAGGGTGTACATCTGAGCGTCGCAGGAAAAACTTGAAAACCCTCTTCAATTATACAACCGTAATGCCATTCAAATGGCGAGGGAGGTACCTATGTTTCTATTGCGGCAAAACGTACACGGATTACATGGAGTTCAAAAAGCACACTAAATCACACGGGCCATGCACCACGAAAGATTACTCGTTGAGAATGATAAAAGGGAGTCATGTTGAGATAAAAGTCGACGTGTCTGAAGTGGCTTGTGATATTTGCGTTGAACCGTTTGAGAGTCAGTCGGTCAGTGAAATCGTCGATCACCTGATCGTCAAACACAATTTAGAATATGACAAAAGTATTGATATTCCATTCCAGGAGTACAGACTCGAGGATTTTCGTTGTCTGTTTTGCGAACAACAGTTTTCCTATTTCGGATATTTGGTCAATCATGTTAACAACGCTCATCCTCAGAACAGTTACGTTTGCGACGAATGCGGTGTTAGTTTCAACAAGAAGCGAGACCTTGCTTTGCACTTTAGGAATTACCATCGGCAAGGCGGTTATCCTTGCGATCAATGCTTACAAAGCTTTCTGTCCTTTCATCTGTTACGGCGACATCAAAAAAGCCACTTTCGACAGTGTAACAATTGCGGAATGCGTTTCTCATCCCTTACTTTCCTACAGAAGCACATGCGAGTTGACCACCCTGACGATGGCACCTATAAATGTAACTACTGTTCTAAGGAGCTGCATTCCGCTCAGGGCTTAAACCAGCACAGAAGCAAGTGCAAGGTGAAGCTTCTGACTCACGAAGTACCTAGTAGTTTGCCAGTCGAAAACGTTGAAGCccaaaagaatttaaatttacaacaaATGCGTCAAAATATCCAGTGTATTCTGAATATGTCAACGGCAACGCCTTTTAAGTTCTTCTCGAAGTTCACCTGCTTCTATTGCTCGTCGAAGTATGTGGAGTTTGAGGAGTTGAGAAATCATACCGCGTCGGAACATCAAGTGTGCGACCTGAAGTCGAAATACATGAGCAGATGCAAAGGGGAACGTGTGATGGTGAAGATCGACGTGTCTGCTCTTGCTTGTAAGGTGTGCTGTGTGCCGATGGACGACTTGGATGCGTTAGTGGACCATCTGATCGCGGAACACAAAGCGAATTATGACAAATCAGTTAAGGGCTGCGTGGAACCCTTCCAGATCGTTAAAGACAATATCCCGTGTCCCATTTGCTCGACAGTATTCAGATATTTTAGCACCCTTCAGCGACACTTGAATACGGTTCATAGCAACAACAATAGGATATGCGATTTCTGCGGCAAGTCTTTCAGGAATGGGGCCAATTTGAAAGTTCACATCTCTTATACCCATTTGGGGTCATGCGAGTGCCACATTTGCGGCGTTAAGTATAAAAATCAATGGTGCTTAGCGCGACATAAAGCGAGACACCACGACGTAAAAGAGTACAAATGTTCGAAATGTCCGGAGCAGTTCCATTCGCAATATCAGAAGCAGAAGCACATGATTAAAGTCCACGACGAGGGCCACAAATGCAATTTCTGCGGCCGCATGTTCACGAGGAACTCCTTTATGAAAGATCACATACGAAGGGTCCATTTTAAAGAGAAGAATGTCCCATGTTCTGTTTGCAATGAGAAATTCTTCGATAATTACCTATTGAAGATGCATATGGTGAAGCATGAAGGCGAAAGGAAGTTCACCTGCGAGATATGTGGGAAAGCGTTTCTAAGGCGTAGCAACTTGGGTTCGCATAAGGAGATGCATAAAAAGTAtggacatttataa
- Protein Sequence
- MNSANYYRRRNLQILFNNTTLIPFKWRMKYMCFYCGRDLGDYSDLRKHTKGHGDCSDSDRAIRLVKAPDSEVKVDVSNLTCEICMTLCENFDEIVSHLIVKHNLPYNKDVDLMITTYRLSDLKCLSCERSFRYFRQLVSHMNNEHPINCFLCHECEHTFNKKRDLDHHVRVYHRKEYSCLKCLMSFATNSEFQHHRRNAHISTCNICFKTFSSEVQRLGHMKRDHDTDGAECGFCHKVMTTKQGFLRHAAQCTVKEHKHSESIVVEDDDRKQSVKEIRNDIACVLNKSTALPFKYFMNRFRCFYCSKDFPRCDSLKQHTVAEHPHCDITFKSMRLRNRYEGMQIKVDISSLSCKLCFATLEDLDSLFEHLTSEHKSRLDRSVCENMQAFKLIEDNFPCPFCGEVYRYFSLLLRHVSRTHTDNKFICTYCGKPFRTNPSLRAHVVTWHNFGRHKCDCGLMFTTNNNLKMHMGRAHGTKVVQCTECQEKFTTHYWMKRHMLEAHGAGHKCSHCGRVYVKNSAMVNHVRRFHLKERNVECSVCFERFFDAQRLKTHMVKHVGERNFHYEYGPYEGCTSERRRKNLKTLFNYTTVMPFKWRGRYLCFYCGKTYTDYMEFKKHTKSHGPCTTKDYSLRMIKGSHVEIKVDVSEVACDICVEPFESQSVSEIVDHLIVKHNLEYDKSIDIPFQEYRLEDFRCLFCEQQFSYFGYLVNHVNNAHPQNSYVCDECGVSFNKKRDLALHFRNYHRQGGYPCDQCLQSFLSFHLLRRHQKSHFRQCNNCGMRFSSLTFLQKHMRVDHPDDGTYKCNYCSKELHSAQGLNQHRSKCKVKLLTHEVPSSLPVENVEAQKNLNLQQMRQNIQCILNMSTATPFKFFSKFTCFYCSSKYVEFEELRNHTASEHQVCDLKSKYMSRCKGERVMVKIDVSALACKVCCVPMDDLDALVDHLIAEHKANYDKSVKGCVEPFQIVKDNIPCPICSTVFRYFSTLQRHLNTVHSNNNRICDFCGKSFRNGANLKVHISYTHLGSCECHICGVKYKNQWCLARHKARHHDVKEYKCSKCPEQFHSQYQKQKHMIKVHDEGHKCNFCGRMFTRNSFMKDHIRRVHFKEKNVPCSVCNEKFFDNYLLKMHMVKHEGERKFTCEICGKAFLRRSNLGSHKEMHKKYGHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -