Sjap022853.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065321.1:8457517-8457993[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-08 2.3e-05 25.2 0.0 4 44 23 63 23 64 0.92 2 2 2.1 1.1e+03 0.7 0.0 21 30 104 113 103 114 0.87
Sequence Information
- Coding Sequence
- ATGATGAAAAAATGTCTTTTTCAGATAAAAATATCGAAGAGAAAATATAATGCCTGGTCACAACTCGATATGGACGAAGCTTTGGACTCGTATAGgaacaaaaatttgaaattcaatGAGGTGTGCCGTACCTATAACATACCAAAACCTACTTTTAGGAATCATTTAAAAGATTTgaataaatacaaaagaaatGGGAGACCCAATGACCTGACTCCAGAAATGGAGTTAGAGCTCGTCAAGCATATTCTTCAATTAGAATCATGCTTTTTTGGTCTTTCCATAAAATACCTACGGCATTTGGCTTTTCATTTGGCggagaaatataatataaatcaccGCTTCAATAAAAGGACCAAATTAGCCGGATGGAAGTGGTACTACAAATTTATGAAACATCATCGTGAGATTTCTCTAAGAGCACCTGAACCGACATCCATGGCACGTTGTAGAggcttcaacaaaaaaaaaatgtaa
- Protein Sequence
- MMKKCLFQIKISKRKYNAWSQLDMDEALDSYRNKNLKFNEVCRTYNIPKPTFRNHLKDLNKYKRNGRPNDLTPEMELELVKHILQLESCFFGLSIKYLRHLAFHLAEKYNINHRFNKRTKLAGWKWYYKFMKHHREISLRAPEPTSMARCRGFNKKKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316252;
- 90% Identity
- -
- 80% Identity
- -