Sjap024285.2
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065322.1:14063866-14064537[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-11 1.5e-08 35.4 0.0 2 41 16 54 15 57 0.92
Sequence Information
- Coding Sequence
- aTGCCAAGACCAAAAAATAAGGAACGGAAAATAGGAAAACACAAAAAAGACGACATGATGTCAGCTTTACGAATGATAGAAAATGGTAACTCCATTAGAAGGGCGGCAAAAACCTATGATATTCCATACCCTTCATTGCGTCGTTACGTACAAAACAAACGTGAACATGGGGATAATATATCACTTGTACCTAGGTATGATATTAATAAAGTGTTTACTCAAGAACatgaacaaatattattaaaatactacaaGGACTGTGCACTAATGTTCTATGGTTTGACCGTCAAAGAATGTAAGAAGGTGGCATACGAAATGACAAAGGTTAATGGCATTAAAATACCAAGCTCCTGGGAAAGGGATCAATTGGCAGGATCAGAATGGTTTCGtttcttcaaaaaaagacaTTCTGATATTTCGGTGAAGAAACCAGACGCTTTAAGTCTCGCACGAGCTACCTCATTTAACCGTGAAACCGtggcaatattttttaataatatggaaGAGTTATTGAAACTAGAGACTAAATTCGCGGATGGAACTCGAATATTTAATCTTGACGAAACCGGAACAACCACCGTTCAGAAACCACAGAAAGTTGTGGCTCCAGCAGCAGCTAAAGTGGGTAAAGTGACAAGCGGGGAAAAAAGGCACTACATGCTGTATGGTTAG
- Protein Sequence
- MPRPKNKERKIGKHKKDDMMSALRMIENGNSIRRAAKTYDIPYPSLRRYVQNKREHGDNISLVPRYDINKVFTQEHEQILLKYYKDCALMFYGLTVKECKKVAYEMTKVNGIKIPSSWERDQLAGSEWFRFFKKRHSDISVKKPDALSLARATSFNRETVAIFFNNMEELLKLETKFADGTRIFNLDETGTTTVQKPQKVVAPAAAKVGKVTSGEKRHYMLYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00745597;
- 90% Identity
- -
- 80% Identity
- -