Basic Information

Insect: Sarcophaga subvicina
Gene Symbol: -
Assembly: GCA_936440885.2
Location: CAKZFJ020000418.1:246724-249897[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.61 63 5.2 2.9 1 21 153 173 153 176 0.81

2 8 0.0001 0.01 17.1 1.6 2 23 378 399 378 399 0.97

3 8 1.3e-05 0.0013 19.9 2.8 1 23 405 427 405 427 0.99

4 8 0.001 0.11 13.9 0.1 1 23 433 455 433 455 0.98

5 8 6.2 6.4e+02 2.1 0.2 1 23 461 483 461 483 0.94

6 8 0.00052 0.054 14.9 6.9 3 23 491 511 489 511 0.97

7 8 2 2e+02 3.6 0.6 1 12 514 525 514 531 0.87

8 8 0.0003 0.031 15.6 0.9 2 23 604 626 603 626 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.61	63	5.2	2.9	1	21	153	173	153	176	0.81
2	8	0.0001	0.01	17.1	1.6	2	23	378	399	378	399	0.97
3	8	1.3e-05	0.0013	19.9	2.8	1	23	405	427	405	427	0.99
4	8	0.001	0.11	13.9	0.1	1	23	433	455	433	455	0.98
5	8	6.2	6.4e+02	2.1	0.2	1	23	461	483	461	483	0.94
6	8	0.00052	0.054	14.9	6.9	3	23	491	511	489	511	0.97
7	8	2	2e+02	3.6	0.6	1	12	514	525	514	531	0.87
8	8	0.0003	0.031	15.6	0.9	2	23	604	626	603	626	0.96

Sequence Information

Coding Sequence: atgtctgcaactataataaaaacagaaaatattgaaagtgaGGACATAAAACCCCAAATAAAAGAAGGCGGTGCTAGTGGTGGTATGTTTGAGAatatgagcccaaagccaatgGTGAAGAAAATACACAGCGCCCTAAGAGTGCAAAGGGAGGGCAAACAATTGAAGTTACGTTTAAAGGAGCAACATACAAAGCCGCAAGGAAACCCTTCAATACTTGCAACACCcacttttaaacaacaaaacagcGTTAAAAGAAGACTTAATAATGACCCACAAGAGTTTAATGAAGATAatagcaaaacaaaatcaaatttaaaagtaaaacgtTCTCGTCTCCAATCACCCGTTCACTATAAAAGCAGACCGACCAGCCCTACAGCTTTAAACAGTTTACCGTATTCCTCTTCCAAATGTGGTGAGATATTTGTAACAAATAATGCTCAGAAATGGACATTCGTTTGTACATATTGTCAAAAATCTACCCGCGACATTGGAGAATTCGTGTGCCATCTGCAATTTAAACACATGGCAGGCCTGTACAATGATCACGAAGAGGAAGACGAAGTTGAAAACAGCCATAATAATCAAGATCTGCTGAATCAAACTGAAGATTCATTTAATAATCAGGATCAAGAGtATTTCGATTGTGCCAATTATTTGGATGTTAATGTGCACACGGATGCTGATGAAACAACtcccaataataataaaataaaaaatcaaacaaatctatcagtaacaaaaaagaaaaaatccaaaacaaaAGATAGTAAAAATCATCATTCGCGAAAGCGTAGTAATAAATACGTGGTTGATTTagttgaagatgatgatgacgatgatgacaatgatgacaATGGTTATGGCAAAGAAACTACCAATAATTCGAGCTATCAACCAGCGGAAAATTTGAATTATGATGTAGAAGATGATGAAGATGGCGTACAGATAGTAGACGATGACAATGACCAGAGAAAcgaaaatgataatgatgaacTGGAAGACGATCATTTAGCCTTTTTAAGATCAGATAATCAAGAAGAAACAACGGTAGATGGAGATGATGGTGGTGGAGACGATGGAAAGACTGGCATTCGAAAATATCGTTCTCATGTGCGCGGTAAAGCCTATTGTAATTTGTGCgataaaacatttcaatattattcTTTATATCGCAATCACATGATAAAACATTCCAATATTACCCCCTATAAATGTCAATATTGCAGTAAAGCCTTCAAATCCAAACAAGCCATACGCTATCATATGAATACTCACACTAAAGAGGTACAATATACCTGTCCCCTATGCCCAACCACTTACGGCACGGAAAATCAATTTATAACGCATGTTTTAATTCATGAAAGTGACACTTGTTTTCCATGTATGGTGTGTGCGAAAATCTTAAAAACTGATCGAGAACGCGACCAACATCTTGAGACACACAGCGAAGAAAGACCGTTCGGCTGTGACTTTTGTAATAAGCGTTTTCGGCAAAAGCATCATCTATCGAATCATTTGAAATTACATTGTCAATATCGTTGTGATTTCTGTAAAGAGGAATTTGCCTCCACACAAACACAAAGGCGTCCTTATGCCTGTCCTTCATGTGAAGACCATCCTCATATAAGAATACAAGTTGAAAGGCAACGTTCAAAATCATTAAGTAATCAAGATGTTAATCCATTAGAGATCCCCAATGAGAATGTGCCACAGGAACAAGATACAGAATGTGTAGATTTGGCTGAGATATCGGATGATGAAGATAGCGAAACCAGTGCCAGTCCAAATGATCAACAACGTGTTACATGCCAATATTGTGCACGTTCTTACAAACAAACCAGTGCTCTTAACTATCATATAAGACAAAAACATCCACAATTATGGAATAAAATGAAGTAA
Protein Sequence: MSATIIKTENIESEDIKPQIKEGGASGGMFENMSPKPMVKKIHSALRVQREGKQLKLRLKEQHTKPQGNPSILATPTFKQQNSVKRRLNNDPQEFNEDNSKTKSNLKVKRSRLQSPVHYKSRPTSPTALNSLPYSSSKCGEIFVTNNAQKWTFVCTYCQKSTRDIGEFVCHLQFKHMAGLYNDHEEEDEVENSHNNQDLLNQTEDSFNNQDQEYFDCANYLDVNVHTDADETTPNNNKIKNQTNLSVTKKKKSKTKDSKNHHSRKRSNKYVVDLVEDDDDDDDNDDNGYGKETTNNSSYQPAENLNYDVEDDEDGVQIVDDDNDQRNENDNDELEDDHLAFLRSDNQEETTVDGDDGGGDDGKTGIRKYRSHVRGKAYCNLCDKTFQYYSLYRNHMIKHSNITPYKCQYCSKAFKSKQAIRYHMNTHTKEVQYTCPLCPTTYGTENQFITHVLIHESDTCFPCMVCAKILKTDRERDQHLETHSEERPFGCDFCNKRFRQKHHLSNHLKLHCQYRCDFCKEEFASTQTQRRPYACPSCEDHPHIRIQVERQRSKSLSNQDVNPLEIPNENVPQEQDTECVDLAEISDDEDSETSASPNDQQRVTCQYCARSYKQTSALNYHIRQKHPQLWNKMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314212; iTF_01315027; iTF_01313335;
90% Identity: iTF_01314212; iTF_01315027;
80% Identity: -