Ssub025760.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- K02A2.6
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000442.1:525537-537056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.8 7.1e+02 1.9 0.9 1 9 292 300 292 304 0.91 2 10 0.00064 0.066 14.6 1.3 1 23 1286 1309 1286 1309 0.97 3 10 5.4e-05 0.0056 18.0 0.4 1 23 1615 1638 1615 1638 0.97 4 10 6.2e-05 0.0065 17.8 1.5 1 23 1647 1669 1647 1669 0.96 5 10 0.00063 0.065 14.6 0.2 1 23 1677 1700 1677 1700 0.95 6 10 0.00055 0.057 14.8 0.6 2 23 1707 1728 1706 1728 0.97 7 10 0.039 4 9.0 0.2 2 23 1736 1758 1735 1758 0.94 8 10 0.00039 0.04 15.3 0.8 1 23 1766 1789 1766 1789 0.97 9 10 1.9e-06 0.0002 22.5 0.2 1 23 1795 1817 1795 1817 0.98 10 10 1.6e-05 0.0016 19.7 1.7 1 23 1823 1846 1823 1846 0.98
Sequence Information
- Coding Sequence
- ATGACTTCTTTGGAACAAGTAGTTGGACAACTCCTGGCACGACAGCAAGAAGCCATGGAAAAACAGCACCAACTAATGGAAAGGCTGATTAATGCAACACAAGGTTCTACGGCTAGTAACGGAAGTGGGTCATCAACAGCTTCTGCAAGTGCAACAGCTCCGGAGACCTTGATGGacattttatcgaaaaatatacgTGAGTTTACCTACGAACCTGAAGAAAACCAAATTTTTGGCACTTGGTACGAGCGCTATGAGGATGTTTTCCAGGTTGATGCAGATCAACTTGATGATGCTGCAAAAGTGAGGTTATTGTTGAGAAAGGTCAGTAACGgtgtttttaacaaatacaaAGACTATCTACTTCCAAAACAACCTCGTGACGTCACATTCCAACAAACGGtagacattttaaaaaaactttttggaaGAAAAGAGAGTTTATTCAGTACTCGGGTAAAATGTATATCAAACATCAAAAGAGAAGATGAAGATATAATCAGCTATGCCGCCAAAGTAAATCGTCactgtgaaaattttttaataaataaatgtactgCTGATAAATTTAAATGTCTTATATTTGTAAATGGTTTGTCATCGCAAAAGGATCAGGAGTATAAAGCGAGACTTTTGACTCTACTAGAGTCTGAAACAGAACAAAATCAGTTGAATTTGGATAATTTAGTCGCTGAAGTAGAACGTCTAAATAGTCTTAAACGCGACatttcaacaaaagaaaatccaaATGTCAACTCCATCCATAGTTCGAAACAACGTATACCACAGAATGCTAATAAAGACCAAAAGCCAAAGCGACCTTGTTGGCAATGTGGAAACATGCATTTTGTTCGGGACTGTAGTTATTCTACACACAAATGCTCGCAGTGTGGTAAAGTTGGGCATAAGGAAGGATATTGTTCTTGTTTTCCAGATGTAAAGCCAAAGctaaacaaaaatgttcagCAACATCAAAATTCAAGTAAAAAGAGTAAATTCAACAAAACGCACAAAACCATTAAAAGCGTATATGGTTCAACAGCAACATGCAAAAATAGACGTTTTATTTCAATCGTAATTAACAATGTAAATCTTACTCTTCAACATGATACTGGTTCGGATGTCACGATCATCTCAAAGAAGAATTGGGTTAAAATTGGTAAACCAACTTTAGAAATTTCTCAGCACAAACCACGAGATGCTTCTACAAATGAAATTTGCATATTAGGTCAATTTCAGTGTACGGTGGTTATCCATAATCAAAGTCAAACCGGCAACATTTTGGTGTCTTCACTTCCTGATTTAAATCTTTTCGGTTCTGATTTAATGGAACAATTTAAATTGTGGAGCAAACCCATTGATTCTTATACGTCGTGTAACCAACTTCAAGTTAACAACACACTCCCAGAATCGGAATTGCGTCAATCATACCCTGAAGTTTTTAGGAATGAAATTGGACATTGCACTCATTTTAAAGTTCACCTACAACTTAAACCACAAGCTGTTCCTGTTTTTCGTCCTAAAAGGCAAGTAGCGTATGCAGCAAAAGATCATCTAGACAGTGAACTTAAAAAACTTGAACGTGAGGGTATCATTTCTCCTATAAATTTTTCGGAATGGGCAGCACCCATTGTGGTAATAAAAAAGGCTTCTGGCAATCTACGTATATGTGGGGATTACTCTACTGGACTAAATGATCAGCTGGAACCTCATACATTTCCATTGCCACTTCcagatgaaatatttataaactttaacaACTGCTCCATCTTTTCaacaattgatttaaataacGCCTACATGCAAATCGAAGTCGACGATGACACGAAAAAACTTCTAGTTATAAACACACATCGCGGCTTATATACTTTTAATCGACTTGCCCCAGGTGTGAGATCAGCTCCTGGTGCTTTTCAACAGTGTATGGAATCAATTGTTTCTGGTATAAAAGGCGTTTTTCCTTATCTGGACGATGTTATAGTAGCCACACCAACACGCGAAGAAAACATTACAGCAGTTAAACAGCGATGGGCTCTTACACTCATGTCGTacgattttaaattacaatacgTTTCAACTCACGAATTCGGAGCTGCTGATATCTTATCACGGCTAATTTCCAACGTACCGAAAGCAAACGAAGACACTATAATTGCTTGTATTCAATTagaagatgaaataaaaatggttaTTAGTGATATCACAAACGCTTTGCCTATAACATTCAACATGATTTGTGCCGCTACTAAAAAGGATTCAAATCTCCAAGATCTTATAAAATTCCTACAAACTGGTAAGTGGCCAAATGAAAAATCTTCTGATATGCAGTGTTATttttcaagaaaacaaaatttaagcatCGTTGATGATTGTGTAATGTACGGGGAGCGTATTATAATACCAAGCTGTTTTAGAAAACGCATTCTAAAAGAATTACACAAAGGACATCATGGTATTGAGAGGACAAAGGCATTGGCTCGTAGCTATGTTTATTGGCCGCATATAGATGACGAAATAAAAAGTTCTAGTGGTAAATCGCCTTCTGAATTGTTCGTGGGGAGAAAAATAAGGATTAATCTTGATCTCCTTAAGAAACCTACACAGTTCCAACAACAGCGAAACGAGAAAATGGAAGAACAATTTAACAAACGTAATGGCGCTAAAGATCGGGTATACAATATTGGTCAGAAAGTTTACGCAAAATTATATAAATGGAATAAATCTGAATGGTTCCCTGGAATTATCAAGCGGAAGCTCGGAAATGTTAACTACGAAgtagaaattgaaaacattcCTGAATTTCGTGCAGTTAGGTCTCATACTAATCAACTAAGGCCTCGTTATTCCGAATCTCAAAATGTGcctaataatgttttatttgattatttcaatttaacacCTCAACATACGTCACCCGCAGAGGAAAGTAACGTTAATGCTGAAATTGAATTAGTACCACTCACTGATGGACAAACTACATCTACAGATGAATTACAAACAATTCGAGATCCACTTTCAGTTACTTCGCCATCTAGTTCAACAAGTGTAAACAATCCACCTACAACTTTAGAAAGTGTTACACCTAACGTTGAAGTAAATACACCGAATAATTCAATAATGGATCCTGTTATTAAAACAGATGAAGCTTCTCCAGCTCTTCGAAGATCCAATCGTAGAAAGCGTTCTCCTGCATTCATTACAACTGGCGCTATCGAGGACTTCTGTTTACTATGCTTGGAGGTACAACAAAGTAATAAAGAATTCTTGGATGGAATTAGAGCAGACACCAGAACTTGGCAGGAACTGAAAATAAAGACCGTCTTGAAAAAACACTTTTGGCCTTTGAATGAAATACTACTACCTTCGTCCTGGGTCTCTTTAAAGTGCTGGCAAAATGTAAGAGATTTTCACAAATTCTATCTGCGTGTACAAGAAGTACAAACAAGTGCAGGAAAATTACGAACTAATAAAACCGAATTACAAAGTTATGATTACTTAGAGCACGAGATTATTATAAATCCATTAAAACCTCCGCAAGATGCGGTAGATATTAAATCTGAACCACTATTTGATGAACTCGATCTGAGTTGTGTACTCTCTAAAGAAATACATTCCACACAAACAAAATTAGCTAAAGATCCCTTGAAAAATCCAAACTATAACGTTATTGGGGACAAAAAGAGTAAAGTCCTTAATATATGGTTGCGCACCAGCACCGATCACAAGGCTCTTATCAATAAACATGAAGGCCTAGcggttaatttaaattgtgatatTTATGGTTTACGCTTAATCGAAGAGAGTTGCCTAAAGCTACAAAAAGAAACTCAACATCCAGTGGGTGGTAAACAAGACCATAAGTGTCCCATATGTTCTAAAATTTCACCAACATTGAGAGCTCTGAAAAAACACACCAATACCATGCACGCACAGGGTTGTGAATATAAATGTAGTCAGTGTGACGAAGGTTTAAAGGCAAACGATACAACTGATGCTATGGAGGACTTCTGTTTACTATGCTTGGAGGTACAACAAAGTAATGAAGAATTCTGGGATGGAATTAAAGCAGACACCAGAACTTGGCAAGAGCTAAATATAAAGACCGTATTGGAAAAACACTTTTGGCCTTTGAATGAAATACTGCTACCTTCGTCCTGGATCTGTTTAAAATGTTGGCAGAATGTAAGAGATTTTCACAAATTCTATCTGCGTATAGAAGAAGCACAAGTACATGCAGGAAAGTTACGAACTATTAAAACAGAGTTACAAACTTATGATTACTTGGAGCCTGAGATAGTCATTAATCAATCACAACCTCCTCATGACGCGGTAGATATTAAAACTGAATCACCATTTGATGAACCCGATTTGGATTATATACCTTTTAACCAAATACAttctacagaaaaaaaattagctaAAGACCCTTTGAAAAATCCAAACCAGAGTGctattgaagaaaaagaaagtaaaacaaagtCCTTAACAGATGATGAAGAGTGGCAAGAAAATGAACCGGACGTTTCAAATAGTTCTAGTGACTGTGATATAAGCTGTAGTAACCAAAATGGTGATACTTCAGATGGTATGATAACTACAAAACGAACACGTGCGTATGTAAAAAGaggcaaaaattataaggataatgattttttcattatgGAACATTTTAAACATATCATTTGCGATCTTTGCGAAGTAGAATTGGAAGACTTTGCCGATATGCAAAAGCATTTCACGAATGTCCATAAACAAGTTGGTTATCTTGTGTGTTGCAGTAGAAAATTCTATCACCGTAATCGTTTAGTCGATCACATTCATACTCATCTAAATCCCGAACACTTCAAATGCGATCAGTGTGGAAAAATTCTTTCAGATCGTGTAAAATTAAAGAGTCATATGTTATCTGTACATCGTCCAAGTGATGTTCAGTTAAGCCATGCTTGTGATGTCTGTGGTAAATCGTTTACCAAAGCCAATGTGTTACGCAGACATAAATTAACGCATTTACCAGAGGCGGAGAAAAAGTTTCCATGTTCAGACTGTGGTAAATTGTATGCCAGTTCTTATCTACTAAAACTTCATAGAGATGTTctacatttaaataaacttgccaAAGTCTGTTATATTTGCGGTTTAACATTGCGCACCAGCACTGAGTATAAGGCTCATATGAACAAACATGAAGGTCTAGCggctaatttaaattgtgatatTTGTGGTTTGCGTTTAACCAGCGAAAGAGGACTAAAAGTACATAAAGACACACAACATCCAGTAGGTGGCAAACAAGAGCATAAATGTCCAATATGCTCAAAAGTTTCACCAACTTTGAGAGCTCTCAAAAAGCACGTCAGTACAATGCACGAAAAGGGTTGCGAATATAAATGTAGCGTGTGTGAAAAGGCTTTTAGAAGACCTGAAGGTTTGAAGgaACACATGGCATCCCATACGGGTACAGCTTTATATACTTGTCCTTGGTGTCCGAAAACTTTCAACTCAAATGGTAATATGCATGCTCACCGAAAAAAAATGCATCCTAAAGAGTGGGAAGAAGCGAAACTAAACAAATATACTGGAGTTGTTccacaataa
- Protein Sequence
- MTSLEQVVGQLLARQQEAMEKQHQLMERLINATQGSTASNGSGSSTASASATAPETLMDILSKNIREFTYEPEENQIFGTWYERYEDVFQVDADQLDDAAKVRLLLRKVSNGVFNKYKDYLLPKQPRDVTFQQTVDILKKLFGRKESLFSTRVKCISNIKREDEDIISYAAKVNRHCENFLINKCTADKFKCLIFVNGLSSQKDQEYKARLLTLLESETEQNQLNLDNLVAEVERLNSLKRDISTKENPNVNSIHSSKQRIPQNANKDQKPKRPCWQCGNMHFVRDCSYSTHKCSQCGKVGHKEGYCSCFPDVKPKLNKNVQQHQNSSKKSKFNKTHKTIKSVYGSTATCKNRRFISIVINNVNLTLQHDTGSDVTIISKKNWVKIGKPTLEISQHKPRDASTNEICILGQFQCTVVIHNQSQTGNILVSSLPDLNLFGSDLMEQFKLWSKPIDSYTSCNQLQVNNTLPESELRQSYPEVFRNEIGHCTHFKVHLQLKPQAVPVFRPKRQVAYAAKDHLDSELKKLEREGIISPINFSEWAAPIVVIKKASGNLRICGDYSTGLNDQLEPHTFPLPLPDEIFINFNNCSIFSTIDLNNAYMQIEVDDDTKKLLVINTHRGLYTFNRLAPGVRSAPGAFQQCMESIVSGIKGVFPYLDDVIVATPTREENITAVKQRWALTLMSYDFKLQYVSTHEFGAADILSRLISNVPKANEDTIIACIQLEDEIKMVISDITNALPITFNMICAATKKDSNLQDLIKFLQTGKWPNEKSSDMQCYFSRKQNLSIVDDCVMYGERIIIPSCFRKRILKELHKGHHGIERTKALARSYVYWPHIDDEIKSSSGKSPSELFVGRKIRINLDLLKKPTQFQQQRNEKMEEQFNKRNGAKDRVYNIGQKVYAKLYKWNKSEWFPGIIKRKLGNVNYEVEIENIPEFRAVRSHTNQLRPRYSESQNVPNNVLFDYFNLTPQHTSPAEESNVNAEIELVPLTDGQTTSTDELQTIRDPLSVTSPSSSTSVNNPPTTLESVTPNVEVNTPNNSIMDPVIKTDEASPALRRSNRRKRSPAFITTGAIEDFCLLCLEVQQSNKEFLDGIRADTRTWQELKIKTVLKKHFWPLNEILLPSSWVSLKCWQNVRDFHKFYLRVQEVQTSAGKLRTNKTELQSYDYLEHEIIINPLKPPQDAVDIKSEPLFDELDLSCVLSKEIHSTQTKLAKDPLKNPNYNVIGDKKSKVLNIWLRTSTDHKALINKHEGLAVNLNCDIYGLRLIEESCLKLQKETQHPVGGKQDHKCPICSKISPTLRALKKHTNTMHAQGCEYKCSQCDEGLKANDTTDAMEDFCLLCLEVQQSNEEFWDGIKADTRTWQELNIKTVLEKHFWPLNEILLPSSWICLKCWQNVRDFHKFYLRIEEAQVHAGKLRTIKTELQTYDYLEPEIVINQSQPPHDAVDIKTESPFDEPDLDYIPFNQIHSTEKKLAKDPLKNPNQSAIEEKESKTKSLTDDEEWQENEPDVSNSSSDCDISCSNQNGDTSDGMITTKRTRAYVKRGKNYKDNDFFIMEHFKHIICDLCEVELEDFADMQKHFTNVHKQVGYLVCCSRKFYHRNRLVDHIHTHLNPEHFKCDQCGKILSDRVKLKSHMLSVHRPSDVQLSHACDVCGKSFTKANVLRRHKLTHLPEAEKKFPCSDCGKLYASSYLLKLHRDVLHLNKLAKVCYICGLTLRTSTEYKAHMNKHEGLAANLNCDICGLRLTSERGLKVHKDTQHPVGGKQEHKCPICSKVSPTLRALKKHVSTMHEKGCEYKCSVCEKAFRRPEGLKEHMASHTGTALYTCPWCPKTFNSNGNMHAHRKKMHPKEWEEAKLNKYTGVVPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -