Ssub025761.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sarcophaga subvicina
Gene Symbol
-
Assembly
GCA_936440885.2
Location
CAKZFJ020000442.1:538115-540269[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 3.9 4e+02 2.7 0.2 3 23 221 242 219 242 0.88
2 10 0.69 72 5.0 4.0 6 23 251 268 251 268 0.99
3 10 4.1e-05 0.0042 18.4 0.4 1 23 274 297 274 297 0.97
4 10 4.8e-05 0.005 18.1 0.2 1 23 306 328 306 328 0.98
5 10 0.12 13 7.4 0.1 3 23 338 359 336 359 0.91
6 10 0.0099 1 10.8 2.5 2 23 366 387 365 387 0.97
7 10 0.0022 0.23 12.9 0.2 3 23 396 417 394 417 0.95
8 10 2.3e-05 0.0024 19.1 0.4 1 23 425 448 425 448 0.97
9 10 3.3e-07 3.4e-05 25.0 0.4 1 23 454 476 454 476 0.98
10 10 8.3e-05 0.0086 17.4 2.2 1 23 482 505 482 505 0.97

Sequence Information

Coding Sequence
ATGGAGGATTGCTGTTTATTATGCTTGGAGATACAACGAAGTGGTGAAGAATTCTGGGATGGAATTAAAGCAGACACCAGAACATGGCAAGAGCTAAATATAAAGACCGTATTGGAAAAACACTTTTGGCCTTTGAATGAAATACTACTACCTTCGTCCTGGATCTGTTTAAAATGCTGGCAGAATGTAAGAGATTTTCACGAATTCTATCTGCGTATAGAAGAAGCACAAGTACATGCAGGAAAATTACGAACTATTAAAACCGAATTACAAAGTTATGATACGTTAGCGCCTGAGATAGCTATAAATCAACCTCAATTTTCGCAAGAACCGGTAGATATTAAAACTGAATCACTATTTGATGAACCGGATCTGGATAGAATCACTACTAACCAAATACAatctacacaaacaaaatttactgAAGACcctttgaaaaattcaaaccaGACTACTATTGAAGACGAAGTAAATAAAGCAGAGTTTTTAACATATGGCGAAGAGTGGCTAAAAAATGAAGCGGAAGACTCAAACACTTCTGGCGACAATAGTTACCGAAATGTTGATGGTTCAGATAGTACGGCACCTGCAAAAATACCGTGggacaaaaattataaggatAATGATATTTTCATTATGGAATATTTTAAACGAATCTTTTGCGATATTTGCAAAGTAGAATTGGAAGACTTTGGCGATATGCAAAAGCATTTCACAAATTTACACAACCAAGTTGGTTATCTGACGTGTTGTAATAGAAAATTCTATCACCGATATCGTTTAGTCGACCATATTCATACTCATCTAAATCCCGAACACTTTAAATGCGATCGGTGTGGAAGAATTCTTTCAGATCGTGGAAAACTGAGGAGTCATATGTTATCTGTACATCGGCCAGTTCCAGTGCAGTTAAACTATCCGTGTGACGTTTGTGGTGAAGCATTTTCCAAAGCTAATGTGTTACGTAGGCATAAATATACTCACATGccagaggaagaaaaaaagctTGCATGTTCAGACTGTGGTCAATTATTTGCcagtttatttgtattaaatctTCATAAAGATGTTCTTCATTtagataaatttgaaaaagtttgtaatattTGTCGACTGACATTACACACCAGCGCCGACTATAAGACTCATATGAATAAACATGCAGATCCAGTGACTTGTTTAGATTGTTATATTTGTGGTTTACGCTTAACCAACGAAAGCGATCTAAAACTACATAAAGAAACTCAACATCCAGTGTATGGTAAAGAAGACCATAAGTGTCCCATATGTCCTAAAATTTCACCAACTTTGAGAGCTCTAAAAAGACACATCAGTACCATGCATGATAGGGGTTGTGAATATAAATGTAGTCTGTGTGAAAAGGCTTTTAGAAGACCTGAAAGTTTGAAGGAACATATGGCGTCCCATACTGGTGCAGCGTTATATACGTGTCCTTGGTGTCCGAAAAGTTTCaccttaaaaagaaatatgcaTGCTCACAGTAAAAGAATGCATCCTAAAGAGAGGgaagaagaaaaacttcaaaaatgTACTGAATCTGTCCCACAACATTAA
Protein Sequence
MEDCCLLCLEIQRSGEEFWDGIKADTRTWQELNIKTVLEKHFWPLNEILLPSSWICLKCWQNVRDFHEFYLRIEEAQVHAGKLRTIKTELQSYDTLAPEIAINQPQFSQEPVDIKTESLFDEPDLDRITTNQIQSTQTKFTEDPLKNSNQTTIEDEVNKAEFLTYGEEWLKNEAEDSNTSGDNSYRNVDGSDSTAPAKIPWDKNYKDNDIFIMEYFKRIFCDICKVELEDFGDMQKHFTNLHNQVGYLTCCNRKFYHRYRLVDHIHTHLNPEHFKCDRCGRILSDRGKLRSHMLSVHRPVPVQLNYPCDVCGEAFSKANVLRRHKYTHMPEEEKKLACSDCGQLFASLFVLNLHKDVLHLDKFEKVCNICRLTLHTSADYKTHMNKHADPVTCLDCYICGLRLTNESDLKLHKETQHPVYGKEDHKCPICPKISPTLRALKRHISTMHDRGCEYKCSLCEKAFRRPESLKEHMASHTGAALYTCPWCPKSFTLKRNMHAHSKRMHPKEREEEKLQKCTESVPQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-