Ssub009356.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- ham
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000078.1:271186-296469[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.61 63 5.2 0.1 2 20 283 301 282 305 0.77 2 9 0.55 57 5.4 4.2 1 23 312 335 312 335 0.92 3 9 1.6e-07 1.6e-05 26.0 3.3 1 23 341 363 341 364 0.96 4 9 1.9e-06 0.00019 22.6 1.7 1 23 370 392 370 392 0.95 5 9 2.2e-05 0.0023 19.2 4.9 1 23 398 420 398 420 0.99 6 9 0.00031 0.033 15.6 1.1 2 21 428 447 427 448 0.95 7 9 7.3e-09 7.6e-07 30.2 1.3 1 23 875 897 875 897 0.99 8 9 3.9e-07 4e-05 24.7 0.9 1 23 903 926 903 926 0.97 9 9 6.6e-05 0.0069 17.7 6.6 1 23 932 954 932 954 0.98
Sequence Information
- Coding Sequence
- ATGATATTCGATCGCTATGCTGTCTCAGGCAGCACTGGTGAGGAATACGAATTCGGTGCGTTAAAACAATTTCCTCAAAATTTAGTTTCACGCGATTCAGTAAATCGCCTTGCCCTAGGTGCTCATAATTCTGATATAAACTATCAGCACAGTAATTTCCATAACGGTTTTAGTCGCAGTAACTCACCAAGTCGGGTATTAGGGCTTGATTCTACTACATTAATAAACACCCTGCCATATACACCCGCACACATGGAGCATTTACTTAATAGCAAACTTCAAGCTGAAAGACTTTTGTTGGAATCAACACAACTACAAGAAGCTGTCTGtgatttaaaaccaaataaaatcgGCGTTTTTGCCAAGCAGTATTTGAGAAGAGGCACAAGATTCGGACCATTTGCCTTGTCTGATTCATTGGAAAAATCAAATGCTTGGGACataTTGCCAATGTCCCAAATACGAAACATGTTGGAGCCATCATCGGAagttagaaatttattaaagaaaattcgtAAAATATCTGCTTTGGAAAGCAGTAAAGAGGCtaattttagtaaattttttgtagcaGGATGTTTGTGGTATGAATCGAACCGGGATATTGATGGTGGAGAGGAAATCGTTATAGATGGCCGGCCCAAAACACTTTTTGATCAGAACGAATTTCTTTCCAACGGAGAACTACAAAATGGCTCTTCAATAAATAGCAGCGATGACAGAAGTGAGCGTGATAATATATCATTTTATGGATCAAATCTAAACTGCGAAGAGGATTTCAAAAAGGACAAATCTTCAGACAATATTAAAAGTGAACTCAGTGATGACGAAAACGGTATCGATATTCGTTGCGAACTTTGtgataaaacatttttagaacTAAAAAGCCTCGACGATCATTTAGTCGGCCAACATAATTTCCGTAAAGACGAATTTTTCTGCGAATTGTGTTCGCAGCGCTTCTGCCATCGTCCCGTATTATTAAAGCACCGAGCATTGCAACATAACGAAATTCGAAAATATCCCTGTGAGAACTGTACTAAGGTATTTTGTGACCCGTCAAATTTACAACGGCATATTCGTAACCATCACATTGGCGCCAGAAGTCACGCTTGCCCTGAGTGCGGTAAAACATTTGCCACATCATCCGGCCTTAagcaacatacacacatacactcttCCGTTAAGCCATTTCAGTGTGAGGTGTGCTTTAAAGCCTATACCCAATTTTCGAATTTGTGCAGACATAGGCGCATGCATGCAAATTGCCGAATGCAAATAAAGTGTAGTAAATGCGGTCAGAGCTTTAGTACGGTAACTTCATTGTCAAAGCATAAAAGATTCTGTGATTCAACAAACGTACCCCCGTCTGGCGTTGGTTTGGCCACCAATCTCCCACATACCCTTCAACATCAGACGCAACAACAATCGCCGACTCAGTCAAGGTCAGCGGGAATTAACGGTACGCTACCTGTCAATATGGCGACACCACCCAATCCCTTTATTTTTTGGCGTTCACCTTTCTATCCCGCATTTACACCAGCTGCAGCAGTCTTTGGACTGCAAGGCATGTTTCCACAATCTTCAGCTACATCAAGTGGAAATTTTTCTCCCATTTTTTCGAAACCATCGGTAGATTCAAAACTACAGCAATTAAAATGTCAGCCTCCAAACAATACCTCTGGTAACAATAATAGCATCAGTAATGGTAACAATGGTAATAGTTCCAATACTAAATCTAATTCGGCGTCAATTAATGCCTCAAACAACGAACTGAATACATTCGGATTGTTTATGCCCaaattagaaatgaattataaatttaaaagtgaaCGAAATCCATCGGAATGTAATTTGCGAGgagtaaaaagaaatacacaATTGTTAAACTCTGATGATGAATCAAAGGAAAGCATCAACGTGGAACTGAAGCCTGAAAATCCAGGGTCTGTGAAACGGGAAGAGATGGAAGATGGCTACGCCATAAGAATAAATGAAGATGACAAAAAATCAATTGATATTTTATCGGTTTCGCCTCATCATGAAACTGAATCAAAAGGTAGTTGTAATGAATTGCCTTTGGACTTAAGTGTCTCGAGAAAAAGAGGTAGTATTGACTCAAATTTAAGCCAAGAAGAATTAAAATCATCTCACGATGATACAACTAATTCCATAAACGTAAGAGAAATCAGTCCAATTGGACAAGACGAAATGAGTAACAGCAATGGTTATGAGcagacaaaaaaacaaaaagtattaatATCCTCAGTTAATAGCAGTCGAACACCAACAGCATCCCCGGGACCAACGCCTTCGCCCTCGCCCCCGTGCAATGTGTCTAATAGCGCCgttcataataataattcagCCATAATGCCCACCTGTCCGCGACCAATTCATCCCATGATTCTCGATGAACTATACAGAACGCATGCGCTTGAAACGACATTTTCTCGTCCATTTCCTTTTTTAGGCTTAATGGGGGAGCGAACACCATTAGATGGCAATGCTTTACGCGCTAGAGATGACGCTTTCGCGCCTGAACCAATATTTCGAGAAGCCATAAGGGGACTCTCTTCAGGTGTTCTGCAAGTACCCCAATCGGGAAAATTAAAAGATCGCTATACCTGTAAGTTCTGTGGCAAAGTGTTCCCAAGATCGGCAAATTTAACGAGGCATTTACGAACACATACTGGAGAACAACCTTATACTTGTAAATACTGTGATCGTGCTTTTAGCATCTCTTCTAACCTGCAAAGACATGTTCGTAACATTCACAACAAGGAGCGTCCATTCCGATGCCATTTGTGTGATCGTTGCTTTGGTCAGCAAACGAATTTAGATAGACATTTAAAGAAACATGAATCGGATACAACAGGTATGGGTTTAGCTATCAGCGATTCTCCAAGTTCAAATGAAGCTGATCGCGAAGATTCCTATTTTGATGAAATTCGCAATTTTATGGATCGAGTCACGTATAACGAGGACTTGTATACACCATCAAGCATAGGAAATGCAGAAAACGATACGGATTATAACGCAAGTGATAATGAAAATGATCTTTCTGTTTCTAGATCATCATCAATTGACCTAACCGTCGATCCACCGAAAGATACCCCAAACGTAATGGAATCagatcaataa
- Protein Sequence
- MIFDRYAVSGSTGEEYEFGALKQFPQNLVSRDSVNRLALGAHNSDINYQHSNFHNGFSRSNSPSRVLGLDSTTLINTLPYTPAHMEHLLNSKLQAERLLLESTQLQEAVCDLKPNKIGVFAKQYLRRGTRFGPFALSDSLEKSNAWDILPMSQIRNMLEPSSEVRNLLKKIRKISALESSKEANFSKFFVAGCLWYESNRDIDGGEEIVIDGRPKTLFDQNEFLSNGELQNGSSINSSDDRSERDNISFYGSNLNCEEDFKKDKSSDNIKSELSDDENGIDIRCELCDKTFLELKSLDDHLVGQHNFRKDEFFCELCSQRFCHRPVLLKHRALQHNEIRKYPCENCTKVFCDPSNLQRHIRNHHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHRRMHANCRMQIKCSKCGQSFSTVTSLSKHKRFCDSTNVPPSGVGLATNLPHTLQHQTQQQSPTQSRSAGINGTLPVNMATPPNPFIFWRSPFYPAFTPAAAVFGLQGMFPQSSATSSGNFSPIFSKPSVDSKLQQLKCQPPNNTSGNNNSISNGNNGNSSNTKSNSASINASNNELNTFGLFMPKLEMNYKFKSERNPSECNLRGVKRNTQLLNSDDESKESINVELKPENPGSVKREEMEDGYAIRINEDDKKSIDILSVSPHHETESKGSCNELPLDLSVSRKRGSIDSNLSQEELKSSHDDTTNSINVREISPIGQDEMSNSNGYEQTKKQKVLISSVNSSRTPTASPGPTPSPSPPCNVSNSAVHNNNSAIMPTCPRPIHPMILDELYRTHALETTFSRPFPFLGLMGERTPLDGNALRARDDAFAPEPIFREAIRGLSSGVLQVPQSGKLKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHESDTTGMGLAISDSPSSNEADREDSYFDEIRNFMDRVTYNEDLYTPSSIGNAENDTDYNASDNENDLSVSRSSSIDLTVDPPKDTPNVMESDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314857;
- 90% Identity
- iTF_01314023;
- 80% Identity
- -