Basic Information

Insect: Sarcophaga subvicina
Gene Symbol: T
Assembly: GCA_936440885.2
Location: CAKZFJ020000178.1:523155-530530[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.17 13.3 1.4 1 23 193 215 193 215 0.98

2 13 4e-05 0.0042 18.4 1.0 2 23 222 243 221 243 0.96

3 13 4.8e-05 0.005 18.1 2.5 1 23 249 271 249 271 0.99

4 13 6.8e-05 0.007 17.7 1.4 1 23 277 299 277 299 0.97

5 13 0.1 10 7.7 1.6 1 20 305 324 305 329 0.90

6 13 7.1e-05 0.0074 17.6 0.3 1 23 350 372 350 372 0.99

7 13 9.3e-06 0.00096 20.4 0.8 1 23 473 495 473 495 0.98

8 13 4e-05 0.0042 18.4 1.0 2 23 502 523 501 523 0.96

9 13 4.8e-05 0.005 18.1 2.5 1 23 529 551 529 551 0.99

10 13 0.0093 0.96 10.9 1.0 5 23 561 579 560 579 0.95

11 13 0.069 7.2 8.2 1.7 1 22 585 606 585 609 0.90

12 13 7.1e-05 0.0074 17.6 0.3 1 23 630 652 630 652 0.99

13 13 0.00052 0.053 14.9 0.6 1 22 658 679 658 682 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.17	13.3	1.4	1	23	193	215	193	215	0.98
2	13	4e-05	0.0042	18.4	1.0	2	23	222	243	221	243	0.96
3	13	4.8e-05	0.005	18.1	2.5	1	23	249	271	249	271	0.99
4	13	6.8e-05	0.007	17.7	1.4	1	23	277	299	277	299	0.97
5	13	0.1	10	7.7	1.6	1	20	305	324	305	329	0.90
6	13	7.1e-05	0.0074	17.6	0.3	1	23	350	372	350	372	0.99
7	13	9.3e-06	0.00096	20.4	0.8	1	23	473	495	473	495	0.98
8	13	4e-05	0.0042	18.4	1.0	2	23	502	523	501	523	0.96
9	13	4.8e-05	0.005	18.1	2.5	1	23	529	551	529	551	0.99
10	13	0.0093	0.96	10.9	1.0	5	23	561	579	560	579	0.95
11	13	0.069	7.2	8.2	1.7	1	22	585	606	585	609	0.90
12	13	7.1e-05	0.0074	17.6	0.3	1	23	630	652	630	652	0.99
13	13	0.00052	0.053	14.9	0.6	1	22	658	679	658	682	0.89

Sequence Information

Coding Sequence: ATGTCATTTGCTTACATGCCTCTGGAGCGAGAGAATACAAGCATTTGTATCATAAAGGGTTTCCTCTACCTCATATTTAAACAATACAACGCTGGTGTAGAAGAGCCAGTGTGCAAGAATGTGGTTCTGTCCACTTCAATAGATTTCATGCGGCATACGACTGATATGCCGCTGAATGATAAAATATGTATACTGGCCTTCGATGAAATGAAGGTAGAGGAAACCTACGAGTATGACTTTCCTGCTGACGTTGTCAGAAACCCAGCCAATTATGTCCAGGTAGTAATGCCTCGAGGCGATTACGAAcctattttcgaagaaaaaaaggaaaacatttgcTCGAATGAAATTTTATCATTTGAGGATACTAATGATTTCGAACTTAATTCATATGGCGATAATGCATTAGAAGACACAAAAAATGCCGTAGAAGATAATAATGGGACCaaatttgaatataatattGATGAAATTGAAGCATTTAGTGATTTGGAAGTGGAGGATATAAGACAAAGTGATGAAGTATTCTGTGAACCTATAAAGAAACTTAAAGATGGCAAAAAAAAGTCGAAAGTGTTTATATGCGACCAGTGTGGTCATCAAGTCAACAGTTCTACGACTTTGAAAATACATTTACAGCGACATTTTGGAGTTAAACGATGCGCATGCGAAATCTGTCCAgataaattcattacaaatgGAGAACTGCGTCGCCATATGCGAAAACATACGGGCGAGAGACCATATTCATGTAAATTTTGTGGCCGAGGATTTACGGATAGTAGCACGCGAAGCAAACATGAGAGAACGCATACAAATGAAAGGCCGTTTGCGTGCCATTTGTGTGGTAAATCGTTTACAGTATCAAACATTCTAAAAAATCACATGTTGTCCCATAcaggaaaaaaagaatttaaATGCGATTTATGCAATAGCGAATTTGGTAGAAAAACCAATTTTGATGCCCACTTTACAAGTAAAATGCATAAAGAGGCAGTTGAAAGGGATAAGCTTGGCCGACAAATCGAATGTAAAACAGAAAGGCGGTATGAGTGCTCACTGTGCGACAAATCGTTTAAAGCGCCCTACATTCTAAGAAATCACATATTGACGCATACAGGTGTAAAGGAGTTTAACGATTACGAACCTATTTTCGAAGATGAAAAGGAAAACACTCGctcgaatgaaattttttcatttgaggATACTAATGATTTCGAACTTAATTCATGTGACGATAATGCATTAGAAGACAGTAAAAATGCCGTAGAAGATACTAATGGGACCaaatttgaatataatattGATGAAATTGAAGCATTTAGTGATTTGGAAGTGGAGGAAATAAGACAAAGTGATGAAGAATTCTGTGAACCTATAAAGAAACTTAAAGATGGCAAAGAAAATCCAAAAGTGTTTATATGCGATCAGTGCGGTTATCAATTCAACAATCCTACGACTTTGAAAATACATTTAAAGCGGCATTTTGGAGTTAAACGATGCGCATGCGAAATCTGTCCAgataaattcattacaaatgGAGAACTGCGCCGCCATATGCGAAAACATACGGGCGAGAGACCATATTCATGTAAATTTTGTGGCCGAGGATTTACGGATAGTAGCACGCGAAGCAAACATGAGAGAACGCATACAAATGAAAGGCCGTTTGCGTTCCATTTGTGTGGTAAATCGTTTACAGCAAAATACATTCTAAAAAATCACATGTTGTCCCATAcaggaaaaaaagaatttaaATGCGATTTATGCAATAGCGAATTTGGTAGAAAAACCAATTTTGATGCCCACTTTACAACTAAAATGCATAAAGAGGCAGTTGAAAGGGATAAGCTTGGCCGACAAATCGAATGTAAAACAGAAAGGCGGTATGAGTGCTCACTGTGCGACAAATCGTTTAAAGCGCCCTACATTCTAAGAAATCACATATTGACGCATACAGGTGTAAAGGAGTTTAAATGTGCTGCGTGCAATAAAGCATTTGCAAGAAAAAGTCAATTGGATGCCCATTTTAcgacaaaaatacacaaacagacAGTTGAAAATAATGAACATCTTAAATTTCAAGAATAA
Protein Sequence: MSFAYMPLERENTSICIIKGFLYLIFKQYNAGVEEPVCKNVVLSTSIDFMRHTTDMPLNDKICILAFDEMKVEETYEYDFPADVVRNPANYVQVVMPRGDYEPIFEEKKENICSNEILSFEDTNDFELNSYGDNALEDTKNAVEDNNGTKFEYNIDEIEAFSDLEVEDIRQSDEVFCEPIKKLKDGKKKSKVFICDQCGHQVNSSTTLKIHLQRHFGVKRCACEICPDKFITNGELRRHMRKHTGERPYSCKFCGRGFTDSSTRSKHERTHTNERPFACHLCGKSFTVSNILKNHMLSHTGKKEFKCDLCNSEFGRKTNFDAHFTSKMHKEAVERDKLGRQIECKTERRYECSLCDKSFKAPYILRNHILTHTGVKEFNDYEPIFEDEKENTRSNEIFSFEDTNDFELNSCDDNALEDSKNAVEDTNGTKFEYNIDEIEAFSDLEVEEIRQSDEEFCEPIKKLKDGKENPKVFICDQCGYQFNNPTTLKIHLKRHFGVKRCACEICPDKFITNGELRRHMRKHTGERPYSCKFCGRGFTDSSTRSKHERTHTNERPFAFHLCGKSFTAKYILKNHMLSHTGKKEFKCDLCNSEFGRKTNFDAHFTTKMHKEAVERDKLGRQIECKTERRYECSLCDKSFKAPYILRNHILTHTGVKEFKCAACNKAFARKSQLDAHFTTKIHKQTVENNEHLKFQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314013;
90% Identity: -
80% Identity: -