Ssub011822.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sarcophaga subvicina
Gene Symbol
-
Assembly
GCA_936440885.2
Location
CAKZFJ020000109.1:38111-43437[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0017 0.18 13.2 0.2 1 23 353 376 353 376 0.95
2 12 0.00021 0.022 16.1 2.1 2 23 379 400 378 400 0.97
3 12 5.9e-05 0.0061 17.9 0.4 1 23 407 429 407 429 0.99
4 12 8e-07 8.3e-05 23.7 2.0 1 23 435 457 435 457 0.99
5 12 0.00064 0.066 14.6 2.1 1 23 464 486 464 486 0.98
6 12 2.5e-05 0.0026 19.0 3.7 1 23 492 514 492 514 0.97
7 12 0.00014 0.014 16.7 0.2 1 23 520 542 520 542 0.95
8 12 1.3e-05 0.0013 20.0 0.8 1 23 548 571 548 571 0.97
9 12 0.0019 0.2 13.1 2.4 1 23 577 600 577 600 0.95
10 12 1.1e-05 0.0011 20.2 1.2 1 23 606 628 606 628 0.98
11 12 0.0001 0.011 17.1 0.5 1 23 634 656 634 656 0.96
12 12 0.0016 0.16 13.4 0.2 1 22 662 683 662 686 0.92

Sequence Information

Coding Sequence
ATGACAGCGGGTATGGACTCGGTAAAGTGCTATCTGTGTGACCATGAATTCGTGGATGGTGAAGAGCCTTGGCTGATGTTTGAACAACGTCTGCGTGAAGACGGACAAGTTGAATGCTCTTTGGCTGACTTGTTGGCACCGATTTTGCAAAAAGACCTGCAGGAATCTATTGCCCATTCAACATTACTGTGTGATTCTTGTAATGCTGATGTCTTGGAATATGAAAATGTCGAGAAACGTATCCTACAGATACGGGAACGCATTTTAAGTTCTTATAAAGAAAATGCAACAGTTCAAAATTTGAATACACCTAACCCAACCACGTCGCTGTCTGATAGAACCTTAGCTGAATCGAGTAATGACGCTGACAATTTCCTTATGAACAATTCTGTTGACATAGAAAATGCAGAATTTGAAGGTTTAATTGAAATGGACTTAGTAGAAGAAGTTCCTGATGATGAAGTGGAAGAAGATAACACAAATATTAATATACTAAAAAGTGAACAAGAAGATCAAGATACTGGAGGAGTTAGTTTTGTGGATAATGTGGATTCAGCAATGATATCAGAAAATTTTGACTTCGCTGCCTTTAATGAACACGTTGCTCAAACATCTCTTCCAGCTGGCGTTTTAAATCTCTCTAATGGTCTTGTAAACTTAGAGGTAGCTGACAAACTACCACTGGAAAACCAAGataTTATAATTTATGATGTTAATCAGGACCAATTACAACAAACAGATTTGGTaatgaaaaaccaaaagaaTGAAAGTGATTTGAAAAATTACGACAGTACTGAAGatgatgatcttaattttataattacaacGGACATATTTACAAGTGACGGAAATTGCGAAGAAACGCAACATTCAGGTGTTTCAGAAGCAATAGCAGCAGAAACTAATGAAAGCACACAAGCAGTTACACCTATCGCACCTAAGCCTGTTTGTAAAAAGGACGGTGATTTCTTTGTGTGTCTTCTGTGTGAGACATCACAAAGCTACGAACGGCAAACGCTGATAGaacattttcaaacatttcataacTCAAAATTTTACATGTGTGAACAATGTCAGGAGGGTTATGAGCGACGTCAAGATTTGAAAACACACACAGAAATTGGACACATCATACAATGTGAATATTGtgaaaaaacttttaacaataCACGCCTTTATCGTCTTCACAAACGTATGCACTACAATAATGGGAAGCCTTACGAATGTCCTGTGTGTCAAAAAATGTATGTCtccaaaacaattttgaaagagcACATGAACACTCACACCGGTGTCAGACCGTTCAAATGTCCCGATTGTCCGAAAGattttgcttcaaaatgtaCTTTACAGACGCATatgaaaattcacaaagaaCGGCCAAGACCATATCAATGCGATCTATGCGAGAAGCGTTTCTTGAATCAACAAAACTTGAACCAGCATAAAAAGTTGCATGTGTCAGTCAAGGCCTTTCAGTGTGATGTTTGTAACAAGGCTTTTACTACTCAGCATTGCCTACAGGTTCATAAAATAGTTCATTCGGGTCAGAGGCCTTTCCTTTGTCGTATATGTGGTAAATCATTTGCAAGAAGACCAGAGATCAAAGATCATGAACGTATTCACACTGGCGAAAGACCATTCAAATGCGATTACTGTCCAATGGCTTTCGCTCAAAAAACTAATTTGGCTAGTCACAAAAAGTCAacacatttaaatgaaaaattacacaaaTGTGATCTCTGTTTACGGTCTTTTAAACGCAAGCGTTTATTAGATTATCACATAAAGGCTGTCCATACAGGAGAACGACCGCATAAATGTGAAATTTGTGGTGCTGGTTTTGTATATCCAGAACATTATAAAAAGCATATGCTAATACATAGTGGAAAAAAGCCATATGCTTGCGAAGTatgtggaaaacaatttaacagtCGTGATAATCGCAATGCTCATCGATTTGTGCACAGTGACAAGAAGCCATATGAGTGCATGGAGTGTGGTGCAGGATTTATGCGTAAACCACTTCTTCTTACACATATGAAGCAAACGAAGCATATAAATGATACGATAATTGTAAATCAACCACAGTTTACGCATCATCAGATACAGGAAAATGGCGGCATCTCGATATCTTCAAATACTGCCGACTACAACAATACAGAGGAATGTGAAATTGATGTCGATAATGATTTGAAGCCGCAAGATGTCTGTGAAGAATCGTTCGATAAAATCATATTCAAAGCTGAAGACTTATTAGCCGAAAGTGTTCCAGTTTCAATTACTGATAAAAATGTTATAACCACAGTTGATGATCATTTAATAAAAGGCGATTTAGATGatgttaaatatttacagtTTGAAGACTTGGATCGTGATGGTCATCAAACACTGACCTGGGTTGATATAGGAGATGACGATAAAGTATAA
Protein Sequence
MTAGMDSVKCYLCDHEFVDGEEPWLMFEQRLREDGQVECSLADLLAPILQKDLQESIAHSTLLCDSCNADVLEYENVEKRILQIRERILSSYKENATVQNLNTPNPTTSLSDRTLAESSNDADNFLMNNSVDIENAEFEGLIEMDLVEEVPDDEVEEDNTNINILKSEQEDQDTGGVSFVDNVDSAMISENFDFAAFNEHVAQTSLPAGVLNLSNGLVNLEVADKLPLENQDIIIYDVNQDQLQQTDLVMKNQKNESDLKNYDSTEDDDLNFIITTDIFTSDGNCEETQHSGVSEAIAAETNESTQAVTPIAPKPVCKKDGDFFVCLLCETSQSYERQTLIEHFQTFHNSKFYMCEQCQEGYERRQDLKTHTEIGHIIQCEYCEKTFNNTRLYRLHKRMHYNNGKPYECPVCQKMYVSKTILKEHMNTHTGVRPFKCPDCPKDFASKCTLQTHMKIHKERPRPYQCDLCEKRFLNQQNLNQHKKLHVSVKAFQCDVCNKAFTTQHCLQVHKIVHSGQRPFLCRICGKSFARRPEIKDHERIHTGERPFKCDYCPMAFAQKTNLASHKKSTHLNEKLHKCDLCLRSFKRKRLLDYHIKAVHTGERPHKCEICGAGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIVNQPQFTHHQIQENGGISISSNTADYNNTEECEIDVDNDLKPQDVCEESFDKIIFKAEDLLAESVPVSITDKNVITTVDDHLIKGDLDDVKYLQFEDLDRDGHQTLTWVDIGDDDKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01314841;
90% Identity
iTF_01314011;
80% Identity
-