Ssub018725.2
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- ZNF711
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000216.1:272052-277838[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0089 0.92 11.0 1.1 3 23 32 53 31 53 0.89 2 15 0.0098 1 10.9 1.3 2 23 62 84 61 84 0.95 3 15 5.1e-05 0.0053 18.0 1.3 1 23 91 114 91 114 0.93 4 15 2.5e-06 0.00026 22.2 1.7 1 23 120 142 120 142 0.98 5 15 9.4e-06 0.00097 20.4 0.9 1 23 148 171 148 171 0.97 6 15 1.4e-05 0.0014 19.8 3.2 3 23 256 277 255 277 0.91 7 15 0.015 1.6 10.3 0.6 2 23 286 308 285 308 0.96 8 15 0.0011 0.12 13.8 3.1 1 23 315 338 315 338 0.93 9 15 1.4e-05 0.0015 19.8 0.5 1 23 344 366 344 366 0.98 10 15 1.4e-05 0.0015 19.8 0.9 1 23 372 395 372 395 0.97 11 15 0.2 21 6.8 8.1 2 23 497 519 496 519 0.92 12 15 0.036 3.8 9.1 1.8 2 23 531 553 531 553 0.96 13 15 0.00011 0.012 17.0 1.1 1 23 560 583 560 583 0.95 14 15 1.5e-05 0.0016 19.7 1.2 1 23 589 611 589 611 0.98 15 15 1.3e-05 0.0014 19.9 5.3 1 23 617 640 617 640 0.98
Sequence Information
- Coding Sequence
- ATGGACATAAATATTAAGCGTATATGCATATGGCCATCAAAAGCGAAACTGCGTAAACATATGTACTGTCACGATACCAATCGGCAGAAGATATGCGATCAGTGTGGCAAAACGTTTGCCTGTAATTCCAGCATGCGTAAGCACGTCGATGCAGAACATTCCCATGTAAAGCCAGAACCTCAACaatgtaaaatatgtaacaCATGGTATCGCAACATGTCTGGCTTAAGGACTCACATGAAATTTATGCATGAAAACATTGGCGGTGAACATCGTTGCAATATATGTAATAAAGTTTCAACAAATGCGCGTGCTTTAAGaagacatatttatttaaatcatgaATGTGAAAGGAAATATAAATGCCATATGTGTGAGAAGGCCTTTAAAAGAGAACAAGATCTAAGAGAACATATTTCTGTACATACTGGTGAAGCTTTATATACATGTCCCAATTGTCCCATGACCTTTTCGTCCAGTGCAAATATGTACAAACATCGTCAACGTTTACATAAAGCCGAATATGCGGCACATAAACAACAACCCATGgctgtaaatattattaaacaagCTAAATCTGTACCAAATACAGTGCGTACTAAAAGAAGAATGATTGTTGAATCACAAACAACGGAAAATCTTTTACAGCCACCAACAGCCACGGCAGCTTTATTAAATCCTCAAATTGTATTAACATCACAatTACCTTCTGAAGGTAAACTACGAGAACATATGCACAGTCATGATGCAACAAAACGACCAATATGCCATAAATGcggcaaaacatttaaaaataattacaatatgaaaaaacatgaagaaaacGAACATGGTGAAGTTATACCAGAGCCCCAACAGTGTACCATTTGTAATACATGGTATCGTAATATGGCCGGCTTAAAGACTCACATGAAAAATATGCATTATAATATGGAAACAGAACATCGTTGTAGCATTTGTAATAAAGTTTCAACAACACATCGTGCCTTACTAAGgcatatttatttgaatcacAAATGTGAAAAACGTTTCAAATGCAATATGTGTGAAAAGGCTTTTAAAAGAGGACAAGATTTACGAGAGCATATATCAGTGCATACGGGAGAAGCTTTGTATACGTGTCCGAATTGTCCAATGACATTTTCATCCAGTGTCAATATGTACAAACATCGTCAACGTGTACATAAGGCCGAGTATGCTGCTTATAAACAGCAATGTTTTCCGCCGAATATTATAAAACAGGCTAAATCAggtgctttaaataaaatacacgatAAAGGAGCAGACCAAGTTGGACAGATAAATAGTAAAtcttatgaaaatattgtttcgaTTTTGCCTAAATGTAAAATATCTTCAGAATTACAAGCCAAAACTAATCTAATAAATATGCAAGCTTTAGCAGCAGCCACCCAATTTGGAATAGAatttcCGACAGCTAAACGTTTGAGTGCCCATGAAAATACTCATAATCCgcagaatattttaatttgcgaTAAATGCggtaaaacatttaaagacaAGTGTCGTTTAAGATTTCATCATCGACACGATCATTCCAGTGAACCAAAACCCGAAAAAATACCAGAACAATGTCCGTTCTGTAACAAATGGTACTCATCCAAATCAAGTGTACACGAGCATGTACGAAATATGCATACAAATAACGATATTGAACATCGTTGTCCAACGTGTGGTTTTGTCTCGACCACAGCCAAGGCACTGAAAAAGCATATACTCTATAATCATGATGTTGTGCGACGGCACAAATGTAATCTATGCGAGAAGGCTTTTAAAAGGCCACAGGATATAAAAGAACATATGGCTACACATACAGGAGAACCATTGTATACATGCGTGAATTGTGGTAAAACTTTCAAATCCAAAGCAAATATGTTTCATCATCGTCGACGTTTTCATAGAGCCGAATGGATTGCAGATCGTACAAAGCCTCCTAAAGAgaaatattcaagaaattaa
- Protein Sequence
- MDINIKRICIWPSKAKLRKHMYCHDTNRQKICDQCGKTFACNSSMRKHVDAEHSHVKPEPQQCKICNTWYRNMSGLRTHMKFMHENIGGEHRCNICNKVSTNARALRRHIYLNHECERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPMAVNIIKQAKSVPNTVRTKRRMIVESQTTENLLQPPTATAALLNPQIVLTSQLPSEGKLREHMHSHDATKRPICHKCGKTFKNNYNMKKHEENEHGEVIPEPQQCTICNTWYRNMAGLKTHMKNMHYNMETEHRCSICNKVSTTHRALLRHIYLNHKCEKRFKCNMCEKAFKRGQDLREHISVHTGEALYTCPNCPMTFSSSVNMYKHRQRVHKAEYAAYKQQCFPPNIIKQAKSGALNKIHDKGADQVGQINSKSYENIVSILPKCKISSELQAKTNLINMQALAAATQFGIEFPTAKRLSAHENTHNPQNILICDKCGKTFKDKCRLRFHHRHDHSSEPKPEKIPEQCPFCNKWYSSKSSVHEHVRNMHTNNDIEHRCPTCGFVSTTAKALKKHILYNHDVVRRHKCNLCEKAFKRPQDIKEHMATHTGEPLYTCVNCGKTFKSKANMFHHRRRFHRAEWIADRTKPPKEKYSRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -