Ssub011963.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- -
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000110.1:397292-405955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.1e-06 0.00084 20.6 1.3 1 23 612 634 612 634 0.97 2 18 0.00016 0.016 16.5 0.5 1 23 640 662 640 662 0.97 3 18 6.9e-05 0.0071 17.6 0.6 1 23 668 690 668 690 0.98 4 18 5.1e-06 0.00053 21.2 3.0 1 23 696 718 696 718 0.97 5 18 6.9e-05 0.0071 17.6 4.7 1 23 724 746 724 746 0.99 6 18 0.00013 0.013 16.8 5.7 1 23 752 774 752 774 0.97 7 18 5.9e-07 6.1e-05 24.1 4.3 1 23 780 802 780 802 0.98 8 18 2.2e-07 2.3e-05 25.5 2.4 1 23 808 830 808 830 0.97 9 18 0.00013 0.013 16.8 6.7 1 23 836 858 836 858 0.97 10 18 0.00021 0.022 16.1 6.6 1 23 864 886 864 886 0.98 11 18 2e-05 0.0021 19.3 4.5 1 23 892 914 892 914 0.98 12 18 7.5e-05 0.0077 17.5 8.3 1 23 920 942 920 942 0.98 13 18 3.7e-06 0.00038 21.6 7.7 1 23 948 970 948 970 0.98 14 18 1.3e-06 0.00014 23.0 7.7 1 23 976 998 976 998 0.98 15 18 0.00041 0.043 15.2 9.5 1 23 1004 1027 1004 1027 0.95 16 18 0.00035 0.036 15.4 0.5 1 23 1033 1055 1033 1055 0.97 17 18 0.0005 0.052 14.9 4.5 1 23 1065 1087 1065 1087 0.98 18 18 1.8e-05 0.0019 19.5 1.6 1 23 1093 1116 1093 1116 0.96
Sequence Information
- Coding Sequence
- atgaatactGATAATGCCGTTGCTAATGCAACAACTCCTGGTGAGTCAACAACAGCggcatcaacagcaacagcaacattatcaaatacaacaacaacagcagttaCAACATCTAATGGCTACGATCCACAgcagcaacaccaacaaaatCGACATTCGCCTTTACAACACCAGCAGCCACACTTAAATGAGTCGCTCAATATTTTAACTACTATTGCTCAGAACACGCCAACATCTAAACAATATATGTCTTCGCCAAATGTCAATGGTAATCAAAATGCTGGTGGTCATATGTCGTCAACGCCGGTACCGTTAACACACTCTGCGACAGCAGCTACAGCAACAACCTCTACAAATATTGTTGAGCATAAGCATGTAATCACACAGTCAGCAAATGTGTCAAATGCAAATTCTTCGAGAACATCTCCAAGCGAAGATGTTACTACGAGTCCCATTGTTTTACCCAATAGCACTACTTTAGTGTCGGCTCACGATCAACATCTTCTGCACCATCaccacaaccaccaccaccacctaccACAGAACCATCATCAACATCCACATCAGCATCAGCTACATCATCACGAAAGTCAATCTTCAAATACGACGCCGTTATTGGTTAGTAATTCTCCAAACGGTACTCCAGCACCTACAGCGGTCACCCTTTTAGCCAATAATCCACAAAATTTGGGCAAATACTGGGTTGTAACTAACTTATTTCAAGGAGCAGGTGGTCAACCAGTCTCTTATAACCAGGAGGGAGGACTagcaccaccaccgccaccacaCACACAGACTTCTATAGCAGGAGTGCCTTCTTCAACAACATTAGCGCGTGCAATACCCACAACTGTTGGTAGCTCAACGGCAGTTACCAAAAGTGAGGTTGTTACTAGCAGTAGCAGTGCGGGAACGCTGCATTTACCACAACAAGCACAAATGTTATCACAAGCTGCTATAGGACAACAATTGCCAAATGGCACTATTATAACAACTCAggcacaacagcaacaacaacaacagcagcagcaacaacaaaggcATGTTACGGAACATCAACAACAGTTACATGTACATGGTCTAAGTAACACAGAAGATAatcgtcaacaacaacaacaattagcgcaacaacaacaatcacacgTTGGTGTTCTTCAATCCGGCGAACCGATAAAAGATGAAAAACCTTTTAGTTCGAATGGTAAAATATCGGCAACAAATCAACAGATTATTATGCAACATATATCAACTACAGCATCATCAGTAACTCCAACGACATCGGGAGCCACTACTTTAGCACTAGGTACGCCTAAAACCGAAATTAAAGAAGATGGTAGCGCTGTTATGAGTGGCAAAATACACCCGGGTATAGAAATGTATAAAGTAAATATTGAAGATTTATCTCAACTCTTTACATACCATGAGGTATTTGGTAAACTTCATGGTGATGTTATAAATCATCCTTTGGCTGCAGCTCATGCATCCTTACCTACTTCcgcaaataataatattgctaCGGCAGTTTCTGCAACAACAACTAGTTCAGGTGATGTAAACAACACAACAGGTGTAACGGTAGTGACAAATAGTGTCCCTATAACGGAATCTACCAGTACTAGCAGTTCAGTTGCCACAGGTGCTGTTGCAACAACTAGCTCAGCCGCTACGACAGCAATTGCCACAAATTCTAATGCAGTggcgacagcaacaacaactactgcgGGAGCACCTCCTGGTGGTCTATTAATGCCTAAAATGGAAGGTGGCATTGCAAATGTAGATCCAAGTACAGTTACATTAGCTCCCGATGGTACGGTGGTATCGACGGGTGAGCATGTCTGCGATATATGCGGAAAAATGTTTGCTTTCCGTTATCAATTAATAGTACATCGTCGTTATCATACTGAACGTAAACCGTTTAATTGTCAAGTCTGTGGTCAGGGTTTCTTTACCTCTCAGGATCTTACACGTCACGGCAAGATCCACATTGGTGGGCCAATGTTTACCTGTTTAGTGTGCTTTAATGTTTTTGCCAACAATGCCTCTTTAGAACGCCACATGAAACGTCATTCGACAGACAAGCCATTTGCTTGCACCATATGTCAAAAGACATTTGCGCGTAAAGAACATTTGGAAAATCACTTTCGTTCGCACACCGGTGAAACTCCATTCCGTTGTCAATATTGTGCTAAAACATTTACACGCAAAGAACATATGGTAAACCACGTGCGCAAACATACGGGTGAGACTCCACATCGTTGCgatatttgtaaaaaatcatTTACCCGTAAGGAGCACTATGTTAATCACTATATGTGGCACACtgGTCAAACTCCTCATCAATGTGAAGTGTGCGGCAAAAAGTATACACGTAAGGAACATTTAGCCAACCACATGCGCTCACATACAAATGATACACCATTTCGGTGTGAAATATGTGGCAAAAGTTTTAGTCGTAAAGAACATTTCACCAATCACATATTATGGCATACAGGAGAAACCCCTCATCGTTGCGATTTCTGTTCGAAAACATTTACACGCAAAGAACATTTATTGAATCATGTTCGGCAGCATACAGGCGAATCGCCACATCGTTGCACATATTGTATGAAAACCTTTACACGCAAAGAACATTTGGTCAATCACATACGTCAACATACTGGTGAAACACCCTTTAAGTGCACTTATTGCACCAAAGCCTTTACGCGTAAGGATCACATGGTCAACCATGTACGACAACATACTGGAGAATCGCCACACAAGTGTACTTTCTGTACAAAAACATTTACGCGCAAAGAGCACTTAACGAATCATGTGCGACAACATACCGGAGAGTCTCCACATCGTTGCAGCTATTGCAAGAAGACTTTTACCAGAAAGGAACATCTTACAAATCACATACGTTTGCACACTGGCGATTCACCGCACAAATGCGAGTATTGTCAGAAAACATTCACACGCAAAGAGCATCTCAACAATCATATGCGTCAACATTCTAGTGATAATCCACACTGTTGCAATGTTTGCAATAAGCCATTTACGCGCAAAGAACATTTGATAAATCATATGTCACGTTGCCATACCGGAGATCGTCCGTTTGCTTGTGAGACTTGCGGCAAATCGTTCCCTCTTAAGGGCAATTTACTCTTCCATCAACGCAGTCATACTAAAGGGCAAGAAATGGAAAGACCGTTTTCATGTGAAAAATGTCccaaaacatttatttgcaaaGGTCATTTAGTATCTCATATGCGTTCCCATTCTGGTGAGAAACCACATGCATGTACTTTATGTAGTAAAGCGTTTGTGGAGAGAGGTAATCTAAAACGTCACATGAAAATGAATCACCCGAATGCACCAATGCCACCACCTCCAGTGCCACATCCAGTTATACCAGCAGGTGTTGTACCCCACATCAAACAGGAAATTAAACCAGTTATCAGAGAAATAGATCCGTTACAAACTACAACACCCACAATGCATACTATACAACAAATCACAGCTGGTGCTGCTGCAAATGCGGTACAATTAACTACAGGTTTGACGCCGTTGGTAACGTCAACCATTACATCGCATGCTGGACAAAAGCAACCAACACCACCGCAGACTCAagtacagcaacaacaacagcagcaacagcaacaacaattacagcAGCAACAAGTTGTTAATGCAcatcatcaacagcagcaacaacagcagcaggtGGCAGCTCACCAACAAGTTttacagcagcagcatcaacaaAATCAGTTATTGCAACTATCTATACAACAGGCTGCAGCAGCGGCTGCCCACCAACAGCTGCAAcatcaagaacaacaacaacaacagcagcatcatcatcagcagcaacaacaacaacaacagcaagctCATCATCAACAGCAACCAGCTCAAAATGTTGCCGGTGTTGCTAATGCtcatcagcagcaacaacagcagtcaACTCAACAACAGCCAACCCAAGcccagcagcaacaacaaccgcCACCACCACAAGTGCCAATCGCTTTGATACAATCGAATCAGGAAGCTTTGGCCCGAGCCACTATGCAACAATTACAGCATATGCCAGCTAATGTTGAACAACATCCAGTAGTATACTAA
- Protein Sequence
- MNTDNAVANATTPGESTTAASTATATLSNTTTTAVTTSNGYDPQQQHQQNRHSPLQHQQPHLNESLNILTTIAQNTPTSKQYMSSPNVNGNQNAGGHMSSTPVPLTHSATAATATTSTNIVEHKHVITQSANVSNANSSRTSPSEDVTTSPIVLPNSTTLVSAHDQHLLHHHHNHHHHLPQNHHQHPHQHQLHHHESQSSNTTPLLVSNSPNGTPAPTAVTLLANNPQNLGKYWVVTNLFQGAGGQPVSYNQEGGLAPPPPPHTQTSIAGVPSSTTLARAIPTTVGSSTAVTKSEVVTSSSSAGTLHLPQQAQMLSQAAIGQQLPNGTIITTQAQQQQQQQQQQQQRHVTEHQQQLHVHGLSNTEDNRQQQQQLAQQQQSHVGVLQSGEPIKDEKPFSSNGKISATNQQIIMQHISTTASSVTPTTSGATTLALGTPKTEIKEDGSAVMSGKIHPGIEMYKVNIEDLSQLFTYHEVFGKLHGDVINHPLAAAHASLPTSANNNIATAVSATTTSSGDVNNTTGVTVVTNSVPITESTSTSSSVATGAVATTSSAATTAIATNSNAVATATTTTAGAPPGGLLMPKMEGGIANVDPSTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVVPHIKQEIKPVIREIDPLQTTTPTMHTIQQITAGAAANAVQLTTGLTPLVTSTITSHAGQKQPTPPQTQVQQQQQQQQQQQLQQQQVVNAHHQQQQQQQQVAAHQQVLQQQHQQNQLLQLSIQQAAAAAAHQQLQHQEQQQQQQHHHQQQQQQQQQAHHQQQPAQNVAGVANAHQQQQQQSTQQQPTQAQQQQQPPPPQVPIALIQSNQEALARATMQQLQHMPANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313142;
- 90% Identity
- iTF_01313142;
- 80% Identity
- -