Ssub022907.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- ttk_1
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000315.1:657954-663991[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-19 8.5e-16 58.3 0.0 2 45 583 627 582 627 0.97
Sequence Information
- Coding Sequence
- ATGTCAgtgcaacaattttgtttacgcTGGAATAATCATCAACCAAATTTTATCTCTGTCTGTTCATCACTGCTGCACAATGGCACATTGGTTGATGTTACGCTAGCAGCAGAGGGGCGACAATTGCAGgctcataaaattgttttatcggCATGCAGTTCATATTTTCAGACACTCTTTACAACCAATCCTTGTCAGCATCCTATTGTTATATTAAAGGACGTTCAATATGACGATCTTAAAACAATGGTGGACTTTATGTACTATGGCGAGGTTAATGTGTCCCAAGAGCAACTGCCTCATATATTAAAGACGGCTGAAATGCTCAAAATAAAAGGTCTCGCCGAAATGCCCACCGATCCCGCCAATTTAACTAAATCTGATAGTAAATCATCAAATGATGCTACAGAATTGGTTGGTAGTGGCGGCAATAATGGACAATTAATTGGTAATAATGGCGGAAATGGTGGCACAGCTGCTGGCGCTAACAGTAGTAGTGGAGGTCTGGGTAGCAGTAGTGGAGGTGGTAGTGTTAGTGATTCAATATGGGGCAGCACTGAATCACAAtttcaacagcagcaacaacaacatcagcagcagcaacagcaacatcatcagcaattacaacaacagcagcagcaacaacaacaccatcatcaacagcaacagcagcaacaattgcATACGCAATTACAAAATAGTCAAACACAAACTcctcaacaacagcagcagcaacagcagcaacaacaacagcagcaacatcatcagcaacaatTACGACGTACACCGTCTCCCTTGGGCGCTGGTGCCTCACCAGCTACCAGACGGAAACGTTTAAGAAAATCTTCAAACAATGGTTCTGGTGAACGTACTAATTCCGAAGATCACAATGCATCTATAGATGCTACAGCAGCGGGAGGTTTGACATTATCTCAAATGAGTCAAATGTCATTTGGTGGTACAGCTACAAATAGTGCTCTGGGTGGTTTAGCGGCACACTCTTTGCATACGGCTAAACTATTAAAAGAAGGGCCCAACAATGATTTAGAAGCCAATCCCCAAGATTCCGATAGTTTGGATGATACACATGGCCATGTACATATgcaaattAAACCTGAAGTTGATATGAGTGGTGTACCGCAGTCAATGCCGTTGGATATTTCAGGTGCCACAACGCCCTCTGAACATGATGCTCCAAATTCCCAATCCGCTCATTcagGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGGTTTTCGCTGTCATCCTGTCCTTCCAATTTAattggcaataacaacaatcaaaatgcaaataacaacaataacaacagttcGAGTAgtgaccaacaacaacagcagcagcagcaacaacaacagcgtcAGCAGCAAGAAGCTGTTGctagtcaacaacaacaacagcagcaacaacaacagcaacacttgCAACAGttacaacaatatcaacatcaGCAAAACTCTGCGTATTCGCCACAAATCATTACAGTCAGTGGTTATACaaatgcagcagcagcagctgtgGCTGCTGCACAAAATTTATCACCACCGTCACCTAATGACGGTAATATGGTGCAAACAGTGTACAGCCAAGGACCAACACCCACCCAATCGCCTGTTGGTAATACTACGGGCTCTGGTGGTGGTGGCAGTGGTAACATGTCAGGTGGAAATTCGTCTGCAAATAATGCTAATATTAAACGTAAACGTTCGGTTAATCCACAAGGTGACGAAAATTTTATTCGGGCCCTGGAGGCAGTACGTTCCGGTGGAATTGGATTCTGTAAGGCAGCTCGTTTATATGGCGTGAATAATCGCACTTTATGGCTCGAATATAAGAAACGTGGTTACCCCGTGTCGAGGCCTAGTATAAAGTCACGAGTCGTCAAGCAAGAACCGAATCTCTCACCCTCTCCAACACCACCTGCCAATGCAACAGATGACACGAATGAAAACTATGATCATATGGCTGCGGCAGTAGCAGCAGCTGCACAGACAGCTGCATTAAATATGCAAATACCACCGACTTCCGAAACACCAACACCTTCGTTAATGTGTACATCACACCATACGGGCGCATCCGCTGGTGCTACTACACATCCAACAATGGGCGTAATGAGCTTTTTGGATACCCGCCATATGGACTTCCCAGCCAGTCTGCATTCAATGTCGCGTCAGCGTTACATTGATGCAGGTACTGGCAGTGGGGCTGGTGCGAGTACCATTAATGTAAATCCAGCTACTGCAATGAATTTACAGAGTATTAATTTCAACTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDATELVGSGGNNGQLIGNNGGNGGTAAGANSSSGGLGSSSGGGSVSDSIWGSTESQFQQQQQQHQQQQQQHHQQLQQQQQQQQHHHQQQQQQQLHTQLQNSQTQTPQQQQQQQQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERTNSEDHNASIDATAAGGLTLSQMSQMSFGGTATNSALGGLAAHSLHTAKLLKEGPNNDLEANPQDSDSLDDTHGHVHMQIKPEVDMSGVPQSMPLDISGATTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPSNLIGNNNNQNANNNNNNSSSSDQQQQQQQQQQQRQQQEAVASQQQQQQQQQQQHLQQLQQYQHQQNSAYSPQIITVSGYTNAAAAAVAAAQNLSPPSPNDGNMVQTVYSQGPTPTQSPVGNTTGSGGGGSGNMSGGNSSANNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPANATDDTNENYDHMAAAVAAAAQTAALNMQIPPTSETPTPSLMCTSHHTGASAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGTGSGAGASTINVNPATAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01236810;
- 80% Identity
- iTF_01315586;