Basic Information

Insect: Sarcophaga peregrina
Gene Symbol: -
Assembly: GCA_014635995.1
Location: CM025790.1:483372-485146[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.2 4.9e+02 2.1 1.1 1 23 256 279 256 279 0.94

2 9 0.0049 0.39 11.9 3.9 1 23 286 309 286 309 0.97

3 9 0.029 2.3 9.4 0.9 1 23 317 340 317 340 0.91

4 9 0.011 0.85 10.8 0.2 3 23 351 372 349 372 0.94

5 9 3.5e-05 0.0028 18.7 1.1 2 23 379 401 378 401 0.92

6 9 1.1e-05 0.00086 20.3 2.1 1 23 409 431 409 431 0.99

7 9 0.16 12 7.2 1.8 2 23 439 463 438 463 0.94

8 9 0.034 2.7 9.3 1.5 1 23 469 491 469 491 0.95

9 9 3e-06 0.00024 22.0 2.0 1 23 497 519 497 519 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.2	4.9e+02	2.1	1.1	1	23	256	279	256	279	0.94
2	9	0.0049	0.39	11.9	3.9	1	23	286	309	286	309	0.97
3	9	0.029	2.3	9.4	0.9	1	23	317	340	317	340	0.91
4	9	0.011	0.85	10.8	0.2	3	23	351	372	349	372	0.94
5	9	3.5e-05	0.0028	18.7	1.1	2	23	379	401	378	401	0.92
6	9	1.1e-05	0.00086	20.3	2.1	1	23	409	431	409	431	0.99
7	9	0.16	12	7.2	1.8	2	23	439	463	438	463	0.94
8	9	0.034	2.7	9.3	1.5	1	23	469	491	469	491	0.95
9	9	3e-06	0.00024	22.0	2.0	1	23	497	519	497	519	0.99

Sequence Information

Coding Sequence: ATGTTGTCTATAAAAGATCTGCAATATTATTGTCGGACGTGTCtagtaaaattggaaaaatcttGTGACGATGATGCTGGGAAATCGATTCCTACAAAGAAATACCCAGAACTTGAGCAATTAATACAAGTGTGTCTTGCAAAAGCAACAGTGGGAGAGGACTGCCTTCCTTTATATGCACCATTTCTGTGTCGTTCGTGTTTTGAGAAATGGTTGGAATTCTTAAATCTTTACCAATTGGCTGTCAAAACTgatgaaaaaataagaagagtATTGGAGAAAGAAGTTTTGAAAACTAGAAATGGAGAGAATGTCAACAGTTTTCAAACTGTGggcaagaagaataaaaatATAAATAAGTATTTTACTGATACCGAAAACTTGGTAGAcataaatgaaatagaaaaatatgaaacatcATCAGCTCGATTGCTTGTAGTGAATGAGCTAAGCAATGCAAACATCACTACCCTGCTAGCGGAAGATTGCACACACAATAACGATACCACTGATGATGATTTAACCGTTACTAGTAGCACCTGTTCAAGAAAAGcggagaaaattaaaatcatttcgtATGCCCCCGATAAAGCATCCGAAGAGACAAGTGAATTAGAGAAAAAACCAACTAAATCAAATTgtacatttaagaaaaaatacagaACTAGGAAAGCTGTTCTTGCACCTATAGAGGAAAGTGAAAAAATTGCGGTAAAGGATAATGCAGACGAAAATGATGACAAgcttgcaataaaaaaaatacgttatCGGTGTGAACCGTGTAGTAAATATTTCTGGGAGAAGAAGAAATATGAAGGCCACATGAAACAAGTCCATGAGGGTGTTAAAAGACCATTCCAGTGTTCTCAATGTGATAAAGCATACAATCTTTACAAAACGCTTTTGCAACACAGAAGAGAATGCCACAGTGAAAAATCACAGAAAATCTTTAAATGCAACCAgtgtcttaaaatatttaaaactgcaATTATTCTAAAGCAACATGTTACCAACCAGCACACGACAGAAAAAGAATCAATGCGTTCAATTTGTGATCAGTGCGGATTTATTGCGGCGCACCAATATTCTTTGGCAAGACatattataaacaaacacacCGAAACTGATCAAATAAAGTGCGACCAGTGtcctaaagtttttaaaacgcGGTATTCACTCAAGTATCATAAATTGGGCAATCATAATCCCTCGAATATAAAGCCATTTAAATGTGCCGAATGCCAAATGGGATTCACTCGTAAAACGTTACTAAACCAACACAAGCGAACGCACCTGAAGTATACTGAACGTATTAAATGTGACTTCGAGGGTTGTGAAGTACGTTTCGTTAAGCATGGTGACAAAACTCATCATATGCGCCTGGTACACCTGAAAGTTAAGCAACATATTTGCGATTTCTGCGGGGAGGCATTTGGTGCTTTGCAAACGCTGCGACATCATCGTTTTATACATACTGGAGAAAAGCCTTATAAATGCAACATTTGTGGTCAAGGCTTTCGACAACGAACAGCAATGAAAACTCATCGGAAAACTCATTTCGGAAAAGACACATCGAATCAGGACGTCATAAATGATTTACCCGAAATGAATTTaagcttaataaataaaattaattga
Protein Sequence: MLSIKDLQYYCRTCLVKLEKSCDDDAGKSIPTKKYPELEQLIQVCLAKATVGEDCLPLYAPFLCRSCFEKWLEFLNLYQLAVKTDEKIRRVLEKEVLKTRNGENVNSFQTVGKKNKNINKYFTDTENLVDINEIEKYETSSARLLVVNELSNANITTLLAEDCTHNNDTTDDDLTVTSSTCSRKAEKIKIISYAPDKASEETSELEKKPTKSNCTFKKKYRTRKAVLAPIEESEKIAVKDNADENDDKLAIKKIRYRCEPCSKYFWEKKKYEGHMKQVHEGVKRPFQCSQCDKAYNLYKTLLQHRRECHSEKSQKIFKCNQCLKIFKTAIILKQHVTNQHTTEKESMRSICDQCGFIAAHQYSLARHIINKHTETDQIKCDQCPKVFKTRYSLKYHKLGNHNPSNIKPFKCAECQMGFTRKTLLNQHKRTHLKYTERIKCDFEGCEVRFVKHGDKTHHMRLVHLKVKQHICDFCGEAFGALQTLRHHRFIHTGEKPYKCNICGQGFRQRTAMKTHRKTHFGKDTSNQDVINDLPEMNLSLINKIN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314196;
90% Identity: iTF_01314196;
80% Identity: -