Sper006496.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025790.1:22236059-22237642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.027 2.2 9.5 0.6 2 23 212 234 211 234 0.94 2 10 0.092 7.3 7.9 0.3 6 23 243 260 243 260 0.99 3 10 0.00092 0.073 14.2 0.3 1 23 266 288 266 288 0.93 4 10 0.0031 0.25 12.5 3.9 1 23 295 317 295 317 0.98 5 10 0.073 5.8 8.2 1.0 1 23 325 348 325 348 0.89 6 10 2.7e-06 0.00022 22.1 1.5 3 23 356 376 355 376 0.96 7 10 0.00027 0.022 15.8 0.5 2 23 385 407 384 407 0.96 8 10 0.75 60 5.0 1.8 3 23 417 438 415 438 0.75 9 10 4.9e-05 0.0039 18.2 3.1 1 23 444 466 444 466 0.97 10 10 6.4e-05 0.0051 17.8 4.4 1 23 472 495 472 495 0.96
Sequence Information
- Coding Sequence
- ATGGATAAATGCCTGATATGTTTGAATAGTAATAGTGATCAAGATACGTCGTCCCGCATCACAACTCTGTCAGCTGAATGGATTGAGGGAAATATTCAAAGGATTATTGAGAAACACCTGTGGTGGTGGTACTTTACGCCTGATACCAATGGTTGCGAGCAATGGATTTGTAGAAACTGCTGGCAGGAAATATTGTCGTTTCATAACTTCTACATTAACGTTGAAATGGTTCACAAACATTATCAAACATTGTCCAAGTCTTTAGCTGCAAACAATAACTACACCAAGGAGCTCAAAGAACCAGTTATAAAGAACGAAGTGATTGGTGAATGTAACCACCAAGTCTTATTAGAACCTGTTAAAAGACGTTCCAGGGGAAGACCTCGTAAGCAAGATATAATTTCTGAGACTGAACAAAAACTTGATACTCATATGctagaaataaaaagtgaaaatattgaaGCTACAGAGTTCACTGGCTTAGATGTGCAATGTAATCAAATTTCTGAAGATGAGCTTTATGATGATGATAGAAATATAAAGACAACAGCACATGGTaaacttataaagaaaaaaaccaaacaaaacaaattaaaaaactcGGAAAATAATGATTTAGAAAATCACAATTTGGAATGCCACATTTGTAATGTTCCGTTGAGTGATTTTCGTTTGCTTAAGTTACACTATCAAAATGATCACAACACTAAAGGTTATGCCATGTGTTGTGgcaaaaagtttcttaagaaaacCTTATTAATCGATCACTTGAGAGTTCACAAAGATCCCAACTACTTTAAGTGTTCAATGTGTGTGAAAACCTTTGAAACACGCCGTGGTTTAGAACTGCATGCTGATGCTCATAAACCACGAGAACGTCTATACAACTGTGATGAATGTGGAAAGTCATATTTTAAGGAACATGTATACAAACGTCATAAATTAACTCACATTCCAGAGAATGAGAAAAAGTTTCAATGTTCacaatgtgaaaaaaaatatgctacaGACTATTTACGGCGACAGCACGAAGACATCACCCACTCTaggaaaaatgtgaaaatttgtGATATATGTGGTAAGGTATTCTGTAATCGCGATACGTTCCAACGTCATATAGAACAGCATGCGGGAGTTGCCTCAGAACTAATATCCTGCGATATCTGTGGTGTTAAGTTAGTTAATAAAGCCGGCCTAAGGAAACACATAAAAATGTGTCACACGGCCGAAAATCTAAAGGAACAAATATGTCCCCATTGTTCGAAAGTTTCACCAAATTTAAATGCTCATCGTATGCATATTAGATTTTCACATTTAATGCAACGCAAGCACTCATGTCATTTATGCGAAAAGGCTTTTAAACGTCCGCTAGAACTAAAGGAACATTTAAGTACGCATACGGGTGAGGCCTTATACAACTGCCCTCATTgtacaaaaacatttatttcgaATGCTAATATGCATAAACATCGAAAACTTGTTCATCGTCAGGAATGGGAAGAAACACGTTTAAAACGATTTAATGGCTGGCGAGAAAAGCCCGTACCGACCTTGACCATTAGTAATAATAATGAAGAATCGTAA
- Protein Sequence
- MDKCLICLNSNSDQDTSSRITTLSAEWIEGNIQRIIEKHLWWWYFTPDTNGCEQWICRNCWQEILSFHNFYINVEMVHKHYQTLSKSLAANNNYTKELKEPVIKNEVIGECNHQVLLEPVKRRSRGRPRKQDIISETEQKLDTHMLEIKSENIEATEFTGLDVQCNQISEDELYDDDRNIKTTAHGKLIKKKTKQNKLKNSENNDLENHNLECHICNVPLSDFRLLKLHYQNDHNTKGYAMCCGKKFLKKTLLIDHLRVHKDPNYFKCSMCVKTFETRRGLELHADAHKPRERLYNCDECGKSYFKEHVYKRHKLTHIPENEKKFQCSQCEKKYATDYLRRQHEDITHSRKNVKICDICGKVFCNRDTFQRHIEQHAGVASELISCDICGVKLVNKAGLRKHIKMCHTAENLKEQICPHCSKVSPNLNAHRMHIRFSHLMQRKHSCHLCEKAFKRPLELKEHLSTHTGEALYNCPHCTKTFISNANMHKHRKLVHRQEWEETRLKRFNGWREKPVPTLTISNNNEES*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314126; iTF_01315809;
- 90% Identity
- -
- 80% Identity
- -