Sper021426.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025793.1:41173641-41177560[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 1.6e+02 3.7 0.7 3 23 420 443 417 443 0.84 2 17 0.0049 0.39 11.9 1.8 2 19 455 472 455 474 0.94 3 17 0.29 23 6.3 0.2 3 23 517 538 516 538 0.94 4 17 0.042 3.4 9.0 0.5 3 23 546 566 544 566 0.96 5 17 8.5e-05 0.0068 17.4 2.4 1 23 573 596 573 596 0.95 6 17 1.3e-05 0.0011 20.0 1.7 2 23 604 625 603 625 0.97 7 17 0.58 46 5.4 0.0 1 20 634 653 634 655 0.90 8 17 0.026 2.1 9.6 2.2 1 22 675 696 675 699 0.91 9 17 0.2 16 6.8 5.0 1 23 704 726 704 726 0.96 10 17 0.29 23 6.3 0.4 1 23 742 767 742 767 0.96 11 17 0.18 14 7.0 2.2 1 23 779 802 779 802 0.96 12 17 0.00028 0.022 15.8 1.7 2 23 808 830 807 830 0.95 13 17 0.00029 0.023 15.8 1.0 3 23 835 856 834 856 0.95 14 17 0.26 20 6.5 2.4 1 23 862 885 862 885 0.91 15 17 0.0047 0.38 11.9 0.7 1 23 890 912 890 912 0.98 16 17 6.4e-06 0.00051 21.0 1.6 1 23 918 940 918 940 0.99 17 17 0.005 0.4 11.9 0.3 1 23 946 975 946 975 0.91
Sequence Information
- Coding Sequence
- ATGGCGGTTAATGATTCCACAGCCACgagtatttgtttatattgcaAAACAACATCTGAGGAagataatgaaaaagaattccATGAAATCTATAATGAaatcggtcttgaactccagtTGCCCACTTTGGTGGAGCAATTTTTCCATATTAAATTACACAACGAAGCCGGTCAGTGTCTATGCGATGATTGTGTTAATCGTTTAATCGAATTGTACGATTTGGCTGAGCACTCAAAACAGGAAGAAAAGGAAACCTCGGCTCTAAATACAATTGCAAAAGAAAGTTTGGACTGCAAGGAGCTAGCCTCCAAAGGAGATAGTATTATATCTCTAAATGAATTAAAGCAAGACATCAAGTTGAGTGTAAAGAATAAGAACAACATTGAGAGTGAACACAACAAATATGATGGCAGGAAAATTTCAAGggatacaaagaaaaaagaagccACAATTCTTCACAATACAAAGAACAGTACTGTGGAGCATATTGTAAGCATTACACTTGATGGTAATTCTTCCACTGTTGATCCCAGGAACTCTCTTATAGAGGATGATATTGATTACAACACTGAAATAGAACAAACTTCTAATGCAACTTCCATAGCAGCCACAGAAATACATTCGGAAGAGTACGATATAATTGAAGAAAATCCAAATGGCTTAAATAATGATGAAGAACTCGTACAAAATACTACCACCACATTAAATGATCACTTGAAAGCAGAAcaagctgatgatgatgatgatgaacagCCCATAATCGAAGACAATTCAACGAAAAGCTCTGATAATGATGTTTATACAGAAGAAGATTTTGTTCTAGAAGAACATGATGAAGAGTGGGACGATGATGAAGAAGGCCAAAAACAGGAAAGTTTTCACTTGGTGCAAAACAATGAGCAagcctctggatcaaaatcatATGATGAATCTATTGAAAATGTAATAGAAATTGATGATagtaatacaaacaataagGCAAATACTGATGAAGCGGATATTGAAAAAGAACATGACGGAAAAACTGATCAATATTGCACCGAAGAGGAGTATTTAGTTGAAGaaaccaaTTGTAACGAGGAATATGATTGTATAGACTTAAACGATTACTTCGACAGGGCAATAACTACTAAATTTAAGGATTTAGAGTTAAATTGGGAGGTTGAGTGTAAACTATGCTTTGAAAAATACCTTAAATTTCAAGATTTGTTAAATCATTCATGccttatagaattaattgaggaACAGCAATGTTGTTGTGTAATAGAAGGATGCGAAGAAAATCTAAGTGATTTAAATTCATTGGCTCGACACTTAATTCTGCAACATTACGACAAATTGGAAGaTATTGCCATATATGGCAGATGTCCTGATTGCcagaaaacattttctaatatCATAGAGTTCAATAAGCACTCGTGCTGTCGCgatattaagagaaaaattggTAGTCAAAATTATTGTCCATCTTGTGAAATGGATTTCCAATCATTGAAAAGATATATATTCCATATGCAATTCCATTTAACAAATCATCGCCCCAAAATTTGTTTACTATGTGGTTCCTTGTTTaataattcaaatgatttttttgaaCACATACAGTATGAACACAAACCACAAGGAGCCATGGCATGCAGGAAGTGTGATCGTTTCTTTAAGGAAAAAGAAGTGTATGAAGGTCATATGCAATTGCATGAAGAATCGAAATATCAATATGCTTGCACATattgtccaaagaaatacacaaataaatgcgGCTTAAATCAACATATGGATATTTATCACAATCATAAGCACAAACCTTTGCAATGTGACTATTGTGACAAAGAGTTCTTTAATAATATATCGTATCGCAATCATATGAAAACCCATGTACCTGATGTTCAAGTTGAATCATTTGTTTGTTCTATATGTGggttaataacaaaatatctaGATGCTATAAAGGATCATGTGGAGCAAGACAAGGATGGACCTTGTTTTTCTGcaattatattaaaagaaactttaacTTTGGGTTATACATGCGAAAATTGTTCGTTAGATTTTTATAGCATCAAACATCTTAAGCAACATCGTTTATCTAGCATCCACAgtgataaatttttctattgtgtCATTTGTCGTCATGAGTTTACAACGTTAAGACACATGCGTAGTCATGTTACAAATCATAAGGAATTCGAAGAATGGCATGAAGCATTTCCAATCACTCGATATTTTGTATGCAATATAGGTCAATGTGAGGAATTCTATCCATTGTGGTCTTCTTTGTATTACCACAAACAAAGACGGCATAAAATTGCTAAAGATACAGAAACCAATAATGATTTCAAGTGCCAATTTTGCCAGCAGCTATGTACTTCGAAAATGTCTTTGGCTATACATGTGGCAAGGAGTCATAATAATTcaAATATACGTTGTACTGAGTGTAACCAAACTTATAAAAGTGAAAAGCATTTACAAGATCATATAGACAAAATACATGTGGAAGTGGCAtgtgaaatttgttataaaaaatttaaaaatcgtcgcaatttaaacatacataatcaaTCGGTGCATTTAAATGAGAAACGCTATTTCTGTCAATATTGTAATAAAGGATATTATTATAAAAGCGAAAAGGATTCTCACGAAAAACAGGTGCATTCAGAAGTGTCCTATAGATGcgaattttgtaattttgttacaAACTATCCAAAATCATTAGAAATACATTTGGACAAGCATTAcgatcaattaaaatttaaatgtacaatTTGTACGAAATCATTTGGTCGCAAACAATTGTTAGTTCAACATATAAATCGTCATCAAGGGAAAAAGCGTTACAAATGTCAGGATTATTTTGGCCAAAGTGATTGTGATGCTGCTTTCATTACATATAATCTACTTAAAAATCATATACAAAAAGAGCATAAGAATCCAAGTAATGAACAAAAATCCGCTAAACGTAAAAGAGTATCAAAAAGTTATCTCAATGTAATACAAGTGGAAGATGATGATAACATTGAATACATCGATGAGGAGGACTTTGTCGATAGTTCTTTGGCTAAACGTTCAAAAGAAAGCTCTAGTAAAAGTAATAATGATGCCAGAACTGATAATGACTCGTTTGAAATTATAGTAACAAATGAAGTATCCATTGATGACAATGAATATGTAATACAATATAAGGATGAAATCAATGCATATAGTGAGTAA
- Protein Sequence
- MAVNDSTATSICLYCKTTSEEDNEKEFHEIYNEIGLELQLPTLVEQFFHIKLHNEAGQCLCDDCVNRLIELYDLAEHSKQEEKETSALNTIAKESLDCKELASKGDSIISLNELKQDIKLSVKNKNNIESEHNKYDGRKISRDTKKKEATILHNTKNSTVEHIVSITLDGNSSTVDPRNSLIEDDIDYNTEIEQTSNATSIAATEIHSEEYDIIEENPNGLNNDEELVQNTTTTLNDHLKAEQADDDDDEQPIIEDNSTKSSDNDVYTEEDFVLEEHDEEWDDDEEGQKQESFHLVQNNEQASGSKSYDESIENVIEIDDSNTNNKANTDEADIEKEHDGKTDQYCTEEEYLVEETNCNEEYDCIDLNDYFDRAITTKFKDLELNWEVECKLCFEKYLKFQDLLNHSCLIELIEEQQCCCVIEGCEENLSDLNSLARHLILQHYDKLEDIAIYGRCPDCQKTFSNIIEFNKHSCCRDIKRKIGSQNYCPSCEMDFQSLKRYIFHMQFHLTNHRPKICLLCGSLFNNSNDFFEHIQYEHKPQGAMACRKCDRFFKEKEVYEGHMQLHEESKYQYACTYCPKKYTNKCGLNQHMDIYHNHKHKPLQCDYCDKEFFNNISYRNHMKTHVPDVQVESFVCSICGLITKYLDAIKDHVEQDKDGPCFSAIILKETLTLGYTCENCSLDFYSIKHLKQHRLSSIHSDKFFYCVICRHEFTTLRHMRSHVTNHKEFEEWHEAFPITRYFVCNIGQCEEFYPLWSSLYYHKQRRHKIAKDTETNNDFKCQFCQQLCTSKMSLAIHVARSHNNSNIRCTECNQTYKSEKHLQDHIDKIHVEVACEICYKKFKNRRNLNIHNQSVHLNEKRYFCQYCNKGYYYKSEKDSHEKQVHSEVSYRCEFCNFVTNYPKSLEIHLDKHYDQLKFKCTICTKSFGRKQLLVQHINRHQGKKRYKCQDYFGQSDCDAAFITYNLLKNHIQKEHKNPSNEQKSAKRKRVSKSYLNVIQVEDDDNIEYIDEEDFVDSSLAKRSKESSSKSNNDARTDNDSFEIIVTNEVSIDDNEYVIQYKDEINAYSE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01315822;
- 90% Identity
- -
- 80% Identity
- -