Basic Information

Insect: Sarcophaga peregrina
Gene Symbol: -
Assembly: GCA_014635995.1
Location: CM025793.1:28787342-28789376[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.17 14 7.0 0.2 3 23 262 283 260 283 0.94

2 9 0.00011 0.0085 17.1 2.4 1 23 315 337 315 337 0.98

3 9 6e-05 0.0048 17.9 1.7 1 23 346 368 346 368 0.97

4 9 4.2e-05 0.0033 18.4 3.0 1 23 376 399 376 400 0.94

5 9 0.04 3.2 9.0 2.8 3 23 407 427 406 427 0.97

6 9 0.0076 0.6 11.3 0.2 3 23 437 458 435 458 0.91

7 9 5.8e-05 0.0046 18.0 0.5 1 23 466 489 466 489 0.97

8 9 9.4e-07 7.5e-05 23.6 0.7 1 23 495 517 495 517 0.98

9 9 8.6e-06 0.00068 20.6 2.0 1 23 523 546 523 546 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.17	14	7.0	0.2	3	23	262	283	260	283	0.94
2	9	0.00011	0.0085	17.1	2.4	1	23	315	337	315	337	0.98
3	9	6e-05	0.0048	17.9	1.7	1	23	346	368	346	368	0.97
4	9	4.2e-05	0.0033	18.4	3.0	1	23	376	399	376	400	0.94
5	9	0.04	3.2	9.0	2.8	3	23	407	427	406	427	0.97
6	9	0.0076	0.6	11.3	0.2	3	23	437	458	435	458	0.91
7	9	5.8e-05	0.0046	18.0	0.5	1	23	466	489	466	489	0.97
8	9	9.4e-07	7.5e-05	23.6	0.7	1	23	495	517	495	517	0.98
9	9	8.6e-06	0.00068	20.6	2.0	1	23	523	546	523	546	0.98

Sequence Information

Coding Sequence: ATGGACTCCTGTTTATTGTGTTTGGGAATAAATAAGCAGTTAATTGGTGCTATAGAAGTCAATTCAACTCAATGGAAGGTagacaatataaacaaaaaaatagagaaacatTTATGGCCAATGAATACTATTCAACCAAATGCTTGGATTTGCTCCGATTGTTGGCGACAATTATACGACTTTAGTCAATTCTATACGCGCATAGAAGAAGCGCATTCAAATTTGGCAACTGCCTTTAAAGTTACAAATGAATGTAAAGCTGTTGTTTGTACAAAAAGTGATGAACAAGGCAATGTAGAAGATGATTGTAAGGAAGACAAGGACGGTATTTACGTGGAAGCAGAAGTTTTAATCGAACAGCCTATTACTGCTGAATTCGATAATGAGAATGAAAATCCTTTAATAAAGCAAGAACAACAAGATGAATCTGATTTCGAAGATGTGCCATTAAAACAAAGACGCAAACGATTTCGTTTAGAGAGAAATACAGCAAATGTTAGAACAGAtcctttaaagaaaacaaaaagacaaaagtctccgaataaaaataaacctaTTAAGGGCTCAATAAAAAGTCCTACAATTGAAAACGATGTTGAGGAAAGTTCAATAAAACAAGAATCAATTACTTTAGACACTTGCGATGATTATAATACCGACACGGAATCTGAATATCACGATGGAGCAAAGTATTCTGAAAGAGGCAAAAAGAAACGCAAGAATCCTGATGAGAAAACTTGCCAGGAACATGATAAAATTATtgctgaaaattttcaaattttctgcaGTATTTGTCAAGTATCACTTGAAAACTTTATAGCCCTGCGTAAACATTTTCGAGAAGAACACAAGAAACGAGGTTTCGTTGTCTGTTGTaggaagaaaatatttacgCGCCCAGTACTAGTCGATCACATACACTTTCACATGGACCCCAATTATTTCAAATGTAAGTTTTGTGAAAGAGTGTATTCGGAGCGAAGTACATTGGAAAGTCATTTAAAATATCACGAAGACAGTCAAAATGGTCGTACGCACTCATGTGAGACGTGTGGTAAAGCATTTGTTGGAGCGACACAATTAGAACATCATAAGTTAACACATGCACCAGATTATGAAAAGAAGTTTTCCTGCACGGAATGTGGTAAATTtttcacTACTTTATACAGTCTCAACTATCATAAGCAAGCTATACACcacaataaatatgtaaaaatttgTGATATTTGTGGGAAAACATTGCGTTGTcgtaattcatttaaattgcaTATGGAAAGGCATGATAACACACGAAATGCACCTATAAACTGTGATATCTGTGGCCTGCGTTTAGTTGATAGTAGAGGTTTACGACGACATAAGAGTTTGCAGCATCCGATCGGTGGCAAAAAGGATTATTCATGTCATATTTGCTCTAAAGTATCTCCAAATCTAAAAGCACTGCGTTCACATATACGTCTAGCCCATGAAACTGGCTACATACATAAGTGTACAATGTGTGATAAGGCCTTTAAAAGGCCAGAAGCTTTAAAGGAACATGTTGCTACACACACTGGTATAGCATTGTATACATGTCCTTGGTGTCCAAAAACCTTTATATCGAATGGTAATATGCACAATCATCGCAAAAAATCTCATCCCAAGGAATGGGAAGAGGCCAAAAGACAAAAATATGCTATTACTGCAAATTCAAATAATACAACGTAA
Protein Sequence: MDSCLLCLGINKQLIGAIEVNSTQWKVDNINKKIEKHLWPMNTIQPNAWICSDCWRQLYDFSQFYTRIEEAHSNLATAFKVTNECKAVVCTKSDEQGNVEDDCKEDKDGIYVEAEVLIEQPITAEFDNENENPLIKQEQQDESDFEDVPLKQRRKRFRLERNTANVRTDPLKKTKRQKSPNKNKPIKGSIKSPTIENDVEESSIKQESITLDTCDDYNTDTESEYHDGAKYSERGKKKRKNPDEKTCQEHDKIIAENFQIFCSICQVSLENFIALRKHFREEHKKRGFVVCCRKKIFTRPVLVDHIHFHMDPNYFKCKFCERVYSERSTLESHLKYHEDSQNGRTHSCETCGKAFVGATQLEHHKLTHAPDYEKKFSCTECGKFFTTLYSLNYHKQAIHHNKYVKICDICGKTLRCRNSFKLHMERHDNTRNAPINCDICGLRLVDSRGLRRHKSLQHPIGGKKDYSCHICSKVSPNLKALRSHIRLAHETGYIHKCTMCDKAFKRPEALKEHVATHTGIALYTCPWCPKTFISNGNMHNHRKKSHPKEWEEAKRQKYAITANSNNTT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314073; iTF_01315754;
90% Identity: iTF_01314073; iTF_01315754;
80% Identity: -