Sper005628.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025790.1:490805-493187[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00032 0.025 15.6 0.5 1 23 203 225 203 225 0.97 2 10 5.9 4.7e+02 2.2 2.8 1 23 230 252 230 252 0.91 3 10 0.0019 0.15 13.2 4.8 1 23 258 281 258 281 0.97 4 10 3.9e-06 0.00031 21.6 0.6 1 23 287 309 287 309 0.96 5 10 0.00018 0.014 16.4 3.7 1 23 315 338 315 338 0.96 6 10 8.4e-06 0.00067 20.6 0.7 1 23 359 381 359 381 0.98 7 10 1.4e-05 0.0011 19.9 2.1 1 23 387 409 387 409 0.98 8 10 0.00024 0.019 16.0 3.3 1 23 415 437 415 437 0.95 9 10 1.9e-06 0.00015 22.7 1.0 1 23 444 466 444 466 0.99 10 10 0.0058 0.46 11.7 0.9 1 23 472 495 472 495 0.97
Sequence Information
- Coding Sequence
- atggatCTACATATCTGTAGAATTTGTGGTGGTATGGAGGAACTAAAAGAGATTTTTGAACAAGATGTCGAAATGATGGAAAAGTTATCGGAATGTGCCAATATTCGCatAGATTCTAATGATGCTTTACCAAAACTCATTTGTGAACATTGTGCCAATAACTTGGAAATATCATATCGCTTGAGAAAACAAAGTGATGAGACGCAAAGGCTTTTGAGGCGAAAAATGGAAATGAGAAAAAGTGAAGATTCCGGTAAAGAACAGAAATCAATAAAAGTCTCACAGCATAGAAAGATAGAACGTGATAATGATGCTATTAAAAGTACAGTTGTTATTCGAGAAACATTGGAGAAAGATATTGATAACGATGAGACAACAGGGTCACAAAATTTGGAAACTGAATATGATAATCGacataattttattgataaaacaTTATTAGATGATGAAACATTATTAGATGATGAAAGTGTTAACCAACCAGCAGTATGCAGTACAGACACATTAGTGATAGAACAATGTACTACAGATGTACTATCATCTTCTTCTATGACGGAAAAAAGTGATCCTAATGCAAATGGATATGACACAAATGTTGGATGCTTATTTGCATGTGATACTTGCCAAAATGTGTTTCGTTCGAAGAAAGACTACATTGCTCACATTAAAGAACATGGATCACAAAGATTCCAATGCATTCAGTGTTGTAAGCTCTTTCCAACTCGGTATCGTTTAAGACGTCATGAGGAAGTTCATAGTGAAACCCTGATTCATCAATGTCTACATTGTGAAAGAGGTTATCGAGTTTTAAATAATCTTCATAGGCATATACGTTCGGtgcatttaaatggaaaaaatttcgaTTGTAGCATTTGCAATGTTTCCTTTTCGCGTAAAGATGTGCTAAAACGTCATATGCTTTTACATTCTGACACAAagaattttcattgtttattatgcTCTCAAAGTTTCAAAACGAAAGATTACTTAAACGCTCATTTAAAAAGTCGACATGAAAGAGATGTTCAAAAGGGTAAACTTAGTAAAAGGATAAGGTCAAATGATTCGAAAAAATATCAGTGTGGATATTgtggtaaaatttttaagtcGTCTTTTCCCTACAAAAATCATATACTTATTCATACAAATGAAAAGCCACACGAATGTGAAACATGTAAGAAAAGATTTCGAACAGTTGCAGCATTAACAACACATCAACGTGTTCATGACGATTACCGACCATACCAATGCgatgtttgtttaaaaagttttaaacaaatttcccaTCTAAAGGAacataaatttttgcatttagaGAATGCTCCACAATATACATGCTCTGTATGCCAATCGTCATTTGTTaagaaaagtaatttaaagGTTCATATGCAAGTTCATGCTACGGAAAAGCCGTTCAAATGTGCAGAATGTACCGCTGAATTCACTTACGTGCACTTACTTCAGCAGCATGCAAACAAAGTTCACAACAGAAAAATAAGTAAAGAATATGTTGAATCAGGAATTATCGACTTAGTTGAACCGGATAATAACAGTGAAGTCTGCGATGAATCGTTAGAACCAAAAGTACTGTACTATATTAATACAATATCTATCGAAAGCGGTGCTGAAGAagtatttgaagaaaataaaaagtctGCTGCTGAGTGTGAAATGCAAAgcgaaaaagaaattgaaaaatgttatatTTCTAATGACGATATATCTCCTTTTAATGAAGATAATTTAATAGATTATATTCATTTAGAATCTTCAAACTCTGTTCAATCATTACTAACTGATGAAATACAATACCCAGGAAATGTTTGTGGAGAAGTAGTTCACACTACGGAAGAAAGCgctgaaatttttgtaaacgaaGAAACGCTATTTACAGATATTGCTTTTAAACcgaatgacaaaataataaaataa
- Protein Sequence
- MDLHICRICGGMEELKEIFEQDVEMMEKLSECANIRIDSNDALPKLICEHCANNLEISYRLRKQSDETQRLLRRKMEMRKSEDSGKEQKSIKVSQHRKIERDNDAIKSTVVIRETLEKDIDNDETTGSQNLETEYDNRHNFIDKTLLDDETLLDDESVNQPAVCSTDTLVIEQCTTDVLSSSSMTEKSDPNANGYDTNVGCLFACDTCQNVFRSKKDYIAHIKEHGSQRFQCIQCCKLFPTRYRLRRHEEVHSETLIHQCLHCERGYRVLNNLHRHIRSVHLNGKNFDCSICNVSFSRKDVLKRHMLLHSDTKNFHCLLCSQSFKTKDYLNAHLKSRHERDVQKGKLSKRIRSNDSKKYQCGYCGKIFKSSFPYKNHILIHTNEKPHECETCKKRFRTVAALTTHQRVHDDYRPYQCDVCLKSFKQISHLKEHKFLHLENAPQYTCSVCQSSFVKKSNLKVHMQVHATEKPFKCAECTAEFTYVHLLQQHANKVHNRKISKEYVESGIIDLVEPDNNSEVCDESLEPKVLYYINTISIESGAEEVFEENKKSAAECEMQSEKEIEKCYISNDDISPFNEDNLIDYIHLESSNSVQSLLTDEIQYPGNVCGEVVHTTEESAEIFVNEETLFTDIAFKPNDKIIK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313217; iTF_01315762; iTF_01314082;
- 90% Identity
- -
- 80% Identity
- -