Basic Information

Insect: Sarcophaga peregrina
Gene Symbol: -
Assembly: GCA_014635995.1
Location: CM025793.1:31394385-31396361[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.026 2.1 9.6 0.1 2 21 275 294 274 297 0.88

2 10 0.32 26 6.2 1.3 6 23 306 323 306 323 0.98

3 10 0.077 6.1 8.1 1.8 1 23 329 352 329 352 0.95

4 10 0.0012 0.097 13.8 1.1 3 23 362 382 360 382 0.97

5 10 0.00019 0.015 16.3 0.1 1 23 390 413 390 413 0.91

6 10 0.00029 0.023 15.8 0.2 3 23 421 441 420 441 0.97

7 10 0.16 13 7.1 0.5 2 23 450 472 449 472 0.95

8 10 2.7e-05 0.0021 19.0 0.1 1 23 480 503 480 503 0.97

9 10 9.3e-07 7.4e-05 23.6 0.7 1 23 509 531 509 531 0.98

10 10 4.9e-06 0.00039 21.4 1.1 1 23 537 560 537 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.026	2.1	9.6	0.1	2	21	275	294	274	297	0.88
2	10	0.32	26	6.2	1.3	6	23	306	323	306	323	0.98
3	10	0.077	6.1	8.1	1.8	1	23	329	352	329	352	0.95
4	10	0.0012	0.097	13.8	1.1	3	23	362	382	360	382	0.97
5	10	0.00019	0.015	16.3	0.1	1	23	390	413	390	413	0.91
6	10	0.00029	0.023	15.8	0.2	3	23	421	441	420	441	0.97
7	10	0.16	13	7.1	0.5	2	23	450	472	449	472	0.95
8	10	2.7e-05	0.0021	19.0	0.1	1	23	480	503	480	503	0.97
9	10	9.3e-07	7.4e-05	23.6	0.7	1	23	509	531	509	531	0.98
10	10	4.9e-06	0.00039	21.4	1.1	1	23	537	560	537	560	0.97

Sequence Information

Coding Sequence: ATGGAGTCCTGCATACTGTgtctggaaataaataaaaattttgtggattccattaaaacaaattcagaaaaatggcAAGAGTACCAAGTAGCAGAAGTGATAGAGAAACATTTTTGGCCACTGAATTCTTTGTTGACGCCACAAAATTCGGGTTTGTGTTTGCTCTGTTGGGAGGAATTAAATAGTTTTCACAAATTCTATATTCGCATAGAAGAAGCCCACATAAACTTTGGCAGACCTATGAAAATAGGCGATAAATCACCAATAGTAGAAAAGGCTGCGAGCATGGACAAAGAAGACGACAAAGAGTTAATACAATGTAGTCTGTTAGAACCCGAAATTTTAATAGACAAGCCTGTGGAAAGTGAGAAAATAGAGATACTATGCACCATAAAAACAGAGCCTGAGGATGAGAATTTTGTTGACGTTCCTATAGAGGATACGAGTGTGCTGCCGACAGACGCTAAAGACTTATCCAATAAAGATCCTTTAAAAAAACCCatcaaaacaagaaataaaacctCAAGGCGAAAAATTGAAACTTGTGCTAGTAACACTcctttgaaaataacaaaagtaGAGTCTGtcgaaattaaaaaggaaaattccaAAACTGAAAACAGCGACAGCgtgaatgataatgatgataacaTAAAACCAGACGATCACAGCGACTCAGATAATGACAGCGATAATAATTATAACCATCAAGATTCGGATTTTCAAGataatatggaaaataaaaagcgAAAAACTTATTATAAACGTCGTACAAACCGCCATGAATATGATCAGTTTATTGGCAAACATCTTAAGGATATTGTCTGTGAGCTTTGCAACACAAATTTCGAAACCTTTGCGGCATTACGTCAACATTTTGCTGGAGTTCATAAGCAGTGGGGTTATGTGGTTTGCTGTAATAAGAAATTCTATAATCGCGTCCGCCTAGTCGATCATATACATTCCCATTTTAATCCTGACCTCTTTAAATGCAAACAATGTGACCGAGTCATGTCCGACCGACTACGCCTAGAAAGTCACAAGTTACGATTTCATGGCGCTACAGAATTAGAGAAGAAACACTGTGATGTTTGTCAAAAACCATTTATAGATGGCTATAGtttgaaaattcataaattaaccCATTTgccagaagaagaaaaaaagtttcccTGTGAGGAATGCGGTAAATTTTATGCTACTCctcaattattaaaattacacaaagaagctgtacatttaaaaaaatttgtcaagaTTTGTTATATTTGTGGCAAATCTATTGCCTCGAGTGCTGATTACAAAATGCATATGAATAAACATGAAGGTATACCAGCACCTGATATTAGCTGTGATGTATGCGGCCTTCGAATGGCAAACGAAAGGCGTCTAAAACGACATAAACAATCTCAACATCCAATTGGTGGTAAAAAAGAGCATCCCTGTCCCATATGTCCCAAAGTATCGCCTACAGTAGAAGCACTTAGAAAGCATATAAAGACTATGCATGAAAAGGGTTATGATCACAAATGTACCATATGTGAGAAAGCTTTCAAGAGGGCAGATGGTTTAAGAGAACACATGGCCTCACATACCGGCACGGCTTTATACTCATGTCCTTGGTGTCCAAAAACTTTCAATTCCAATGGTAACATGCATGCTCATCGAAAAAGAGTACATCCAAAAGAGTGGGAAAAAGAAAAGCTCAAAAAATATTCTGGCATTTTGCCACAACAATTGCAATCGACAGAACAATCAAATTAA
Protein Sequence: MESCILCLEINKNFVDSIKTNSEKWQEYQVAEVIEKHFWPLNSLLTPQNSGLCLLCWEELNSFHKFYIRIEEAHINFGRPMKIGDKSPIVEKAASMDKEDDKELIQCSLLEPEILIDKPVESEKIEILCTIKTEPEDENFVDVPIEDTSVLPTDAKDLSNKDPLKKPIKTRNKTSRRKIETCASNTPLKITKVESVEIKKENSKTENSDSVNDNDDNIKPDDHSDSDNDSDNNYNHQDSDFQDNMENKKRKTYYKRRTNRHEYDQFIGKHLKDIVCELCNTNFETFAALRQHFAGVHKQWGYVVCCNKKFYNRVRLVDHIHSHFNPDLFKCKQCDRVMSDRLRLESHKLRFHGATELEKKHCDVCQKPFIDGYSLKIHKLTHLPEEEKKFPCEECGKFYATPQLLKLHKEAVHLKKFVKICYICGKSIASSADYKMHMNKHEGIPAPDISCDVCGLRMANERRLKRHKQSQHPIGGKKEHPCPICPKVSPTVEALRKHIKTMHEKGYDHKCTICEKAFKRADGLREHMASHTGTALYSCPWCPKTFNSNGNMHAHRKRVHPKEWEKEKLKKYSGILPQQLQSTEQSN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314046;
90% Identity: -
80% Identity: -