Basic Information

Insect: Sarcophaga peregrina
Gene Symbol: -
Assembly: GCA_014635995.1
Location: CM025789.1:108034398-108036222[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.8e-06 0.00022 22.1 0.9 2 23 274 296 274 296 0.96

2 8 0.00015 0.012 16.6 3.5 2 23 304 326 303 326 0.96

3 8 1.5e-05 0.0012 19.8 2.2 1 23 347 369 347 370 0.96

4 8 5.8e-06 0.00046 21.1 1.0 1 23 390 412 390 412 0.95

5 8 6e-05 0.0048 17.9 3.2 1 23 418 440 418 440 0.99

6 8 3.4e-07 2.7e-05 25.0 1.9 1 23 446 468 446 468 0.99

7 8 7.4e-07 5.9e-05 23.9 2.5 1 23 474 496 474 496 0.99

8 8 0.00082 0.065 14.3 1.5 1 22 502 523 502 526 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.8e-06	0.00022	22.1	0.9	2	23	274	296	274	296	0.96
2	8	0.00015	0.012	16.6	3.5	2	23	304	326	303	326	0.96
3	8	1.5e-05	0.0012	19.8	2.2	1	23	347	369	347	370	0.96
4	8	5.8e-06	0.00046	21.1	1.0	1	23	390	412	390	412	0.95
5	8	6e-05	0.0048	17.9	3.2	1	23	418	440	418	440	0.99
6	8	3.4e-07	2.7e-05	25.0	1.9	1	23	446	468	446	468	0.99
7	8	7.4e-07	5.9e-05	23.9	2.5	1	23	474	496	474	496	0.99
8	8	0.00082	0.065	14.3	1.5	1	22	502	523	502	526	0.91

Sequence Information

Coding Sequence: atgagTAGTACATGTCGCACTTGTTTAAACACATCCTTTAAAGGATTGCAGGCTTTATCAAAAATTGCGACAGACGATGAGGATAAACCACAAAAGTCTTACGCACAGCTTCTTAATGAGGTGGCCAACATTAATgtAAAGAATGATGATGACAGTTCGAAGTTGCcacaatttatttgtgtttattgttCACGTAAATTAAAGGCAGCTTATGCTTTTGTCCAACAGGCACAAAATGCCAATGAGAAACTTTATTGCATGCTGGTCCAACAAAGCGATGCTAGTGAAACTAAACAAGTGGACTGTTTGCAGGAAACACAAATCGATATTGATTCTTGCCTGCAAATAAAACTTGAATGTGATGATGGAGATGAAAACGAAAGTATGGATGAGGACAATACAATGGACAATGAATTAATGGGGAAAAATAGCCAATTAAAGAAAGAAGTCAAAGAAGACGAAGATGCTTTAGAAACAAGTAACTGTCAAATTGACAAGGAATTTCCAAGcagGAATTCCTTGAATGCGTCGCCGGACACTTTAGATAATATGAAAGACACAAATAATATATTTGATACTGAAAACAATGTTCTTAATACTCCGCCAAAAAATTCTGATATAACTGATGACAACAACAGCGTTAAGGATATAACGTCTGATTTTTCTACAGATAGCGATGAATtgcaaaagaaaaggaaaatatccaacaagaaaagaagaataaaaaagaaaacttcttcCGCTATAAAAGTTGTAAGAAAAGCTAGAACTTCCAAAGAAGAGCTAAAaaatgaggatgatgatgaatCTTTGCCAGCAAAATGTGAGGATTGTGACAAGGTTTTTGCTAATTCACGTCTGTTAAATCGCCATAAGCGTGGTACTCATGTGCCGGAAGATTTGAAAGTACAATGTCTTCATTGTGACGTCAAATTCAGTCGACGTCATAATATGTATGCTCATATGCGCCAAATCCACAAGTCGGAAAACCTCGAAGATcttcaattacaaaataaaaaagttgcaACCAATAAACAATATCCCTGTCAGGAGTGCTCTCGTTCATACACAAATAAGTACAAGCTAATAGCTCACGTTAAAAGCCATCATAATCCTGATAATAAAAATAGCGCTAACACCGATAAAACTTTACAGCCAAGAAGGCGTTTCTTGTGTACTCTGTGTGGACTGACATTTGAAAGTCAGTCAAATTTAAACATACATTTTAGACGTCATACTGGCGAAAAACCCTATAAATGTGATTTCTGTGATCGTGCCTATCACAGATTGTATGATCTCCAAGTGCATCGTCGTTCACATACCGGCGAAAAGCCGTATCAATGTAATCTTTGCGAAAAGGCATTTAGAAGATCGAATAAGTTAAAAATTCACTTGCGAACACATACAAATGAACGACCCTATAAGTGTACCCAATGCGAAAAGGCATTTAAACAATCGAAAgatttaaatatacataaacGAACACATACCGGCGAAAGGCCCTATAAGTGCGGTGTGTGCCAAAGTACGTTTACACAGAGTAATTCTTTACGCTTGCATCAAGtcaaacaaaagcattttgaaacGCCGGCCCCAGTGGGGAACATACCAAGTGAAGTAGTACCGCTGCCCGCAGACCTagagtatttaaaaatcatttaa
Protein Sequence: MSSTCRTCLNTSFKGLQALSKIATDDEDKPQKSYAQLLNEVANINVKNDDDSSKLPQFICVYCSRKLKAAYAFVQQAQNANEKLYCMLVQQSDASETKQVDCLQETQIDIDSCLQIKLECDDGDENESMDEDNTMDNELMGKNSQLKKEVKEDEDALETSNCQIDKEFPSRNSLNASPDTLDNMKDTNNIFDTENNVLNTPPKNSDITDDNNSVKDITSDFSTDSDELQKKRKISNKKRRIKKKTSSAIKVVRKARTSKEELKNEDDDESLPAKCEDCDKVFANSRLLNRHKRGTHVPEDLKVQCLHCDVKFSRRHNMYAHMRQIHKSENLEDLQLQNKKVATNKQYPCQECSRSYTNKYKLIAHVKSHHNPDNKNSANTDKTLQPRRRFLCTLCGLTFESQSNLNIHFRRHTGEKPYKCDFCDRAYHRLYDLQVHRRSHTGEKPYQCNLCEKAFRRSNKLKIHLRTHTNERPYKCTQCEKAFKQSKDLNIHKRTHTGERPYKCGVCQSTFTQSNSLRLHQVKQKHFETPAPVGNIPSEVVPLPADLEYLKII*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01313170;
90% Identity: iTF_01314032;
80% Identity: -