Sper009798.2
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025790.1:102951019-102953006[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8e-05 0.0014 19.6 3.3 2 23 213 234 212 234 0.96 2 12 0.001 0.083 14.0 2.1 1 20 240 259 240 260 0.95 3 12 0.0016 0.13 13.4 0.2 1 23 275 297 275 297 0.97 4 12 0.01 0.8 10.9 1.1 1 21 302 322 302 325 0.96 5 12 3.7e-06 0.00029 21.7 1.4 1 23 331 353 331 353 0.98 6 12 4.4e-08 3.5e-06 27.8 1.1 1 23 359 381 359 381 0.99 7 12 3.5e-06 0.00028 21.8 0.7 1 23 387 409 387 409 0.95 8 12 1.7e-05 0.0014 19.6 1.9 1 23 414 436 414 436 0.97 9 12 3.8e-05 0.003 18.5 1.3 1 23 442 464 442 464 0.95 10 12 1.9e-05 0.0015 19.5 4.9 1 23 470 492 470 492 0.98 11 12 0.00013 0.011 16.8 0.6 1 23 498 520 498 520 0.97 12 12 0.0004 0.031 15.3 0.7 1 23 526 548 526 548 0.93
Sequence Information
- Coding Sequence
- atgacTACAGTTCTATTGGGTCGTATTTGTCGTACCTGTTTACAAAAATCCAGTGTTATGCATAAGTTACAAGAATTTATAGTTGATGATTTACAAATAGAGCAGATGTTGAATAAGTCTGTACCCAACTTTGACTTGGAAATGGATGATATACCATTACCGGTAGAGATATGCGACAATTGCCTGCACAAGTTACGTATATCTTACGAATTTATACAAATATGTCTCAAAAGCAACAAAGAACTAAGGAATATCTTAAATCAACAAGAACAGGAAATTGAAAATGCTGTAGTAGCTGCTCAGCTACAAGATGTAAACATTCTGGAGGAGACGGATATACTAatggacaattttaaaaaagaactgCAAGATGACGACTCTAATATAAATGGTGGTAAAGATTTATTGCAAAGGCCATTGAGTCCTGATTATCAATTAGAAGCAGTAAAACTAGAAGtagaaatacaaaatgaaaatgacaaaGAGTACATTAGCAGTTCAGACGAATATTGGCCAAATGATGATAAAGCGGATAGTGCAGAaaacttttttgaaaatttagcaAAAGGTTCTTTAGATGTAAAACCCAAAAGAAAATATCGTCGCAGAATTCCACTTAAACCATCAATCGCCAAAATGTGTCCACATTGTAAGAAAGTGTTTtccaaaagaaatctgttaacaaaacatttatcGGTACATTCACtggaaaacaaatttgtatGTAACATTTGCGATTACAGGTTCCATACggagaaacaattaaaaacccACAAAACCTGTAAACATGTTGGTTTGGAAATAAGCTTAGCCGGTGGCCCATATCATTGTCCCGATTGTCCAATGATATTTCAACAAACACGAGCCTTGGCTGCCCATCGTGTCATGCATTTGGAAAGAGATTTTAAATGCCAAGTATGTGGCATTAATCTTAAAACTCTTGCTGCCGTTACCAGACATATGAACTGCAAACATCCTCATGTATTGCCCTATAAATGTCATATATGTGATAAAGCATTTCCGGTGGAAACTCATTTAAACGACCATATAAATGAGCACATGGGtcagaaaaaatacaaatgcaatATGTGTGAGAAAaGTTTTCCCAATTCAACTGCTTTAAAGGATCACATGCGTACTCATACAGGGGAAGCACCATTTTTATGTCCCCAATGTGGCAAATCTTTTAAAACAGCCAATGTTTTGAGGCAACACTTGCAGAGACATGGTGAGAAAAATTTCCATTGTCCAGAATGCCCAATGAAATTCTATGTCAAAGTGAATTTAACCAAACATATGACCTCTCACACTAAATTAAAACCGCACATATGCGAGATTTGTGGTTCAGCATTTACGCGTCAGGATTCTTTAAAGGCTCACAAATTTAAACATACCGGTGAAAGGCCTTTCAAATGTGAGGATTGTAATATGAGTTTCGTTTTCAAGCGCCATCTTAAAAGACATAAGATCACTCATACCGGAGAAAAGCCTCACATGTGTACCTTCTGTGATCGAGCCTATGCAGCCAGTGGCGATTTGGTTAAACATTTGCGTACTCACGTGGGAGAAAAAACCTATTTCTGTGATGAATGCCCGGaatcttttaaatattctatggATTTGAAAGATCATAAAGTCCAACACTACAAGGAGAAACAGTTGTTAAAACAAAACTCTATTGAAAATAACCAAACAATCGAATCTAATAATCAAACTCAGCTAGCAGAAAATAATTCGGACGTTCGTAAAGAACtacaatttgaaattgataaaaaagatttttga
- Protein Sequence
- MTTVLLGRICRTCLQKSSVMHKLQEFIVDDLQIEQMLNKSVPNFDLEMDDIPLPVEICDNCLHKLRISYEFIQICLKSNKELRNILNQQEQEIENAVVAAQLQDVNILEETDILMDNFKKELQDDDSNINGGKDLLQRPLSPDYQLEAVKLEVEIQNENDKEYISSSDEYWPNDDKADSAENFFENLAKGSLDVKPKRKYRRRIPLKPSIAKMCPHCKKVFSKRNLLTKHLSVHSLENKFVCNICDYRFHTEKQLKTHKTCKHVGLEISLAGGPYHCPDCPMIFQQTRALAAHRVMHLERDFKCQVCGINLKTLAAVTRHMNCKHPHVLPYKCHICDKAFPVETHLNDHINEHMGQKKYKCNMCEKSFPNSTALKDHMRTHTGEAPFLCPQCGKSFKTANVLRQHLQRHGEKNFHCPECPMKFYVKVNLTKHMTSHTKLKPHICEICGSAFTRQDSLKAHKFKHTGERPFKCEDCNMSFVFKRHLKRHKITHTGEKPHMCTFCDRAYAASGDLVKHLRTHVGEKTYFCDECPESFKYSMDLKDHKVQHYKEKQLLKQNSIENNQTIESNNQTQLAENNSDVRKELQFEIDKKDF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313145;
- 90% Identity
- iTF_01314007;
- 80% Identity
- -