Sper009793.2
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- ZNF275
- Assembly
- GCA_014635995.1
- Location
- CM025790.1:102934019-102937526[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00043 0.034 15.2 1.3 1 23 190 212 190 212 0.97 2 15 0.00042 0.033 15.3 0.1 1 23 218 240 218 240 0.98 3 15 6.6e-07 5.2e-05 24.1 0.3 1 23 292 314 292 314 0.98 4 15 2.1e-05 0.0017 19.3 0.3 1 23 429 451 429 451 0.96 5 15 0.085 6.7 8.0 1.0 1 23 457 479 457 479 0.93 6 15 4.4e-06 0.00035 21.5 0.3 1 23 496 518 496 518 0.98 7 15 0.021 1.6 9.9 0.5 1 23 527 550 527 550 0.95 8 15 0.00071 0.056 14.5 4.9 1 23 556 578 556 578 0.98 9 15 0.00019 0.015 16.3 0.4 2 23 585 606 584 606 0.97 10 15 2.4e-08 1.9e-06 28.6 0.7 1 23 612 634 612 634 0.96 11 15 0.002 0.16 13.1 1.3 1 23 640 662 640 662 0.98 12 15 0.00017 0.014 16.5 2.3 1 23 668 690 668 690 0.96 13 15 3.3e-05 0.0026 18.7 3.2 1 23 696 718 696 718 0.99 14 15 2.3e-06 0.00018 22.4 0.7 1 23 724 746 724 746 0.99 15 15 6e-05 0.0047 17.9 0.3 1 23 752 774 752 774 0.97
Sequence Information
- Coding Sequence
- ATGTCTAGTGATTTATCATCTAAATGCCGTACTTGCCTAAGCGATTCCAATTTCTTCCATCAACTGTTCGATTATGTAGATGAGGACTACAAAATACTGGAGATGTTGGATGGCGTAGTGCCTCAAATTGATATTAAATGTAATACACAATTCTCCACCGTAGTATGCCAGCCGTGTGTGGATAAATTGCTTACTGGCTATAAATTCCAGCAGCTGTGCATAGAAACTAATAATCGTTTACATGATTTACTGGGCATTGCTGTGTTTGAGACAGAGCCCAAGGTGGAGAAGACATTGGATCCTTTGACGGGTGggacaaattttaaaatgaaacaagagGTAGACGATGATGCCAGTTATGAAAGGGAAATAAATGCTGATGAATTGGAAGTGGCCCTTAGATCAGACCATGAAAATGACTGGGAGCCTTTGGCCAGTGACAGGGATAGTGATACAGATTCCAGCAATGAAAAGTTGTCAGTTCTTAAAGAAAGATCAGCGAAGAAACCTCCCTTGAAAGTGGAACACCTAGAGAAgataaacaaaattaaaattcgtataaaaaatTTCCGCTGTAAAGAATGTGACAAAGTGCTGAATAGTTATTACCGCCTCAAAAGACACGAAGCGATGCACTCGCAAAAAGCTGAATATCCGTGTGAAACGTGCAATACAACTTTTGCAGCTGAAAAGACTTTAAAAGCTCACGTATTAACACATAAAATAGAACAGAATAACAGTGCAGACGTTAGTAGCGATCAAATTGAAGGCAATGAAATTAATGATACTAAAGAATTTGTGGACAGCAAAGAAAATGATTGTGAAGACAGCAAAGAAAATATGGAAGATCAGGACTCTGAAGAAACTTTTACATTTCAATGCCCGGATTGTccaaaatcttttgaaaagaaAGCTTCTTTATCAGCTCACTATAAAGTGCATAGAAAGAAACACGCgaataaattgaataacaaagacaaaaagGTTGAGCCTAAACTTGAAGGAAATAAATCACCAGATCAAAAAGAAACTACTGAGGATAAAGAGCCCAATGTATTTATTAAAGAGGAATTGGAAATAACACCACAAATATTGGAAGAACCCATGGATGAGTTTGAAACAAATGGTGaatggtttaataataataacgaggATTCGGACAGTGACAATACGGAAAAGAATCTTTTTGTCAAACCTGTTAAATCCACCAAAAATATTGACTTTGTAGACACTGGCATAGGCGAAGTAGAaaagCCCAATAACAGTAATAAAAGAAGTGGTAGTTTTCCCTGTGAGGTGTGCGGCAAGATATTCGATCGTCCTTATCGTTTAAAACGCCACAGTTCTGTCCATTGCCTTACCAGGCCCCATGAATGTGAAATTTGTAAATATCGCTTTGCCaccgtaaatattttaaaggcacATTTATTTCAACATGAAAACGATACTATTGGCAATTTAACTGGCCAGTCACGGCCGGAAGGCTTCAAATGTCCTGACTGTCCTAGACGTTTTGAAAAACAGGCATCCCTTTCAGCTCATCGCCAGATACATACACGCAATGCATCCGAAGCCAATTATCCGTGCATGGTATGCCAGCGTAACTTTATGTCGGTGAGATCTCTAACGGAGCACATAACAAATAAACATCCCGAAGTGGAAAAACATAAATGTGATCAATGTGACAAAACTTTTGTCCTACACGCCCACTTAGTTGAGCATTTAAACCGTcataaaggcaataaaaatttgGTTTGTCTGATATGTGAAAAGGAGTTTGGATATACGAATACTTTAAAAGAACATATGCGCACACATAGCGGTGAAAGTCCTTATTTATGTCCGCAGTGCGGTAAAACATTCCGTAGTGCTAGCAATTTACGGCAGCATATGGAAAGACATACCGGCTTAAAGAAATATCAATGTCCTGAATGTCCCAGTCGTTTTAACTGTAGATCAGACTTGATAAAACATGCCTCAACACATACGAATGCCAAGCCTCATGTCTGTGATACATGCGGCTCACGTTTTACCAGAGCATACTCTTTGCAAAAGCACAAATTACTGCATTCGGGTGAGAGACCGTTTAAATGTGATCAGTGCAGTATGACttttgctaTTGTCTATCACTTAAGACGGCATATGCGCACCCATACGGGAGAAAAACCTTACAAGTGTAAATACTGTGAACGAGCATATGCTGAGAGTGGAGACTTGACCAAACATTTGAGGACCCATGTCGGAGAAAATACATATATGTGTGATCAGTGTCCTATGGCTTTTAAATATCAGGCGGAATTACGACAACATCAATCGGAACATTACAAAATGGCTCAAAAACTATTACAGCAGGCACAAAAAATGTCTGATGAAGCACAACAGCATGAGATAAACGACAGCCAACATGTACAGCTAAATGATCAACAGCAGCAGTTAAACATGACAGAACAAAATAACCAGCATATAATTAAAGCCGATCAAAGTCATAATTTACCTTTAGGAGGTATGGCCAGTTATGATCAACAAATGTCCTTATTAGATCATAGACAACAATTGCTGCCCTTagggcaacaacaaaatactgaaaatgttaTATCACGCCAGGATAATTTAGATATAAAGAATCTCAATAATTGA
- Protein Sequence
- MSSDLSSKCRTCLSDSNFFHQLFDYVDEDYKILEMLDGVVPQIDIKCNTQFSTVVCQPCVDKLLTGYKFQQLCIETNNRLHDLLGIAVFETEPKVEKTLDPLTGGTNFKMKQEVDDDASYEREINADELEVALRSDHENDWEPLASDRDSDTDSSNEKLSVLKERSAKKPPLKVEHLEKINKIKIRIKNFRCKECDKVLNSYYRLKRHEAMHSQKAEYPCETCNTTFAAEKTLKAHVLTHKIEQNNSADVSSDQIEGNEINDTKEFVDSKENDCEDSKENMEDQDSEETFTFQCPDCPKSFEKKASLSAHYKVHRKKHANKLNNKDKKVEPKLEGNKSPDQKETTEDKEPNVFIKEELEITPQILEEPMDEFETNGEWFNNNNEDSDSDNTEKNLFVKPVKSTKNIDFVDTGIGEVEKPNNSNKRSGSFPCEVCGKIFDRPYRLKRHSSVHCLTRPHECEICKYRFATVNILKAHLFQHENDTIGNLTGQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNASEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNKNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHTNAKPHVCDTCGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIVYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSEHYKMAQKLLQQAQKMSDEAQQHEINDSQHVQLNDQQQQLNMTEQNNQHIIKADQSHNLPLGGMASYDQQMSLLDHRQQLLPLGQQQNTENVISRQDNLDIKNLNN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314833;
- 90% Identity
- iTF_01314002;
- 80% Identity
- -