Sper011556.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025791.1:45406294-45415655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.5e-06 0.00067 20.6 1.3 1 23 607 629 607 629 0.97 2 18 0.00016 0.013 16.5 0.5 1 23 635 657 635 657 0.97 3 18 7.3e-05 0.0058 17.7 0.6 1 23 663 685 663 685 0.98 4 18 5.4e-06 0.00043 21.2 3.0 1 23 691 713 691 713 0.97 5 18 7.2e-05 0.0057 17.7 4.7 1 23 719 741 719 741 0.99 6 18 0.00013 0.01 16.8 5.7 1 23 747 769 747 769 0.97 7 18 6.2e-07 4.9e-05 24.2 4.3 1 23 775 797 775 797 0.98 8 18 2.3e-07 1.8e-05 25.5 2.4 1 23 803 825 803 825 0.97 9 18 0.00014 0.011 16.8 6.7 1 23 831 853 831 853 0.97 10 18 0.00022 0.018 16.1 6.6 1 23 859 881 859 881 0.98 11 18 2.1e-05 0.0017 19.3 4.5 1 23 887 909 887 909 0.98 12 18 7.9e-05 0.0062 17.5 8.3 1 23 915 937 915 937 0.98 13 18 3.9e-06 0.00031 21.7 7.7 1 23 943 965 943 965 0.98 14 18 1.4e-06 0.00011 23.1 7.7 1 23 971 993 971 993 0.98 15 18 0.00043 0.034 15.2 9.5 1 23 999 1022 999 1022 0.95 16 18 0.00036 0.029 15.4 0.5 1 23 1028 1050 1028 1050 0.97 17 18 0.00053 0.042 14.9 4.5 1 23 1060 1082 1060 1082 0.98 18 18 1.9e-05 0.0015 19.5 1.6 1 23 1088 1111 1088 1111 0.96
Sequence Information
- Coding Sequence
- atgaatactGACAATGCCGTTGCTAATGCAACAACTCCTGGTGAGTCAACAACAGCggcatcaacagcaacagcagttaCAACATCTAATGGCTACGATCCAcagcagcaacaccaacaaaatCGACATTCGCCTTTACAACACCAGCAGCCACAATTAAATGAGTCGCGCAATATTTTAACTACTATTGCTCAGAGCACAGCAACATCTCAACAATATATGTCTTCGCCAAATGTCAGTGGTAACCACAATGCTGGTGGCAGCCTTGGTCATATGTCGTCAACGCCGGTACCGTTAAAACACTCTACGACGGCAGCTACAGCAACAACCTCTACAAATATTGTTGAGCATAAGCATGTAATCACACAGTCAGCAAATGTGTCAAATGCAAATCCTGCGAGAATATCTACAAACGAAGATGTTGTTTCGAGTTCCATTGTTTTACCCAATAGCACTACTTTAGTTTCGGCTCACGATCAACATCTTCtgcatcaccaccaccaccaccaacctCAGAACCATCATCAACATTCACAACAGCTACATCATCAAGAAAGTCAATCTTCAAATACGGCGCCGTTATTGGTTAGTAATTCTCCAAACGGCACTCCATCACCTACAGCGGTCACCCTTTTAGCCAATAATCCACAAAATTTGGGCAAATACTGGGTTGTAACTAACTTATTTCAAGGAGCAGGTGGTCAACCAGTCCCTTATAACCAGGAGGGAGGACTAGCACCACTGCCACCACACACACAGACTTCTATAGCAGGAGTGCCTTCTTCACCAACATTAGCGCGAGCAATACCCACAACTGTTGGTAGCTCAACGGCAGTTACCAAAAGTGAGGTTGTTACTAGCAGTAGCAGTGCGGGAACGCTGCATTTACCACAACAAACACAAATGTTATCACAAGCGGCTTTAGGACAACAATTGCCAAATGGCACTATTATAACAACTcaggcacaacaacaacaacaacagcagcaacagcaacaaaggcaTGTTACGGAACATCAACAACAGTTACATGTACATGGTCTAAGTAACACAGAAGATAaccgtcaacaacaacaacaacagcagcaacaacaacaacaacaattaacgcaacaacaacaatcacacgTTGGTGTCCATCAATCTGGCGAACcaataaaagatgaaaaaccTTTTAGTTCGAATGgtaaaatatcaacaacaaaccAACAGATTATTATGCAACATATATCAACTACAGCATCATCAGTAACTCCAACGACATCGGGAGCCACTACTATAGCACTAGGTACGCCTAAAACCGAAATTAAAGAAGATGGTAGCGTTGTTATGAGTGGCAAAATTCACCCGGGCATAGAAATGTATAAAGTAAATATTGAAGATTTATCTCAACTCTTTACATACCATGAGGTATTTGGTAAACTTCATGGTGATGTTATAAATCATCCTCTGGCTGCAGCTCATGCATCCTTACCTACTGCcgcaaataataatattgctgCAGCAGTTTCTGCAACAACAACTAGTTCAGGTGAAGTAAACAATACAACAGGTGTACCGGTAGTGACAAATAGTGTCCCTATAACAGAATCTACCAGTACCAGCAGTTCAGTTGCCACAGGTGCTGTTGCAACAACTAGCTCAGCCGCTACGACAGCAATTGCCACAAATTCTAATGCagtggcaacagcaacaacaactactgcgGGAGCACCTGCTAGTGGTCTTTTAATGCCTAAAATGGAAGGTGGTATTGCAAATGTCGATCCAAGTACAGTTACATTAGCTCCCGATGGTACGGTGGTATCGACGGGTGAGCATGTCTGCGATATATGCggaaaaatgtttgctttccGTTATCAATTAATCGTACATCGTCGTTATCATACTGAACGTAAACCGTTTAATTGTCAAGTATGTGGTCAGGGTTTCTTTACCTCTCAGGATCTTACACGTCACGGCAAGATCCACATTGGTGGGCCAATGTTTACCTGTTTAGTGTGCTTTAATGTTTTTGCCAACAATGCCTCTTTAGAACGCCACATGAAACGTCATTCGACAGACAAGCCATTTGCTTGCACCATATGTCAAAAGACATTTGCACGTAAAGAACATTTGGAAAATCACTTTCGTTCGCACACCGGTGAAACTCCATTCCGTTGTCAATATTGTGCTAAAACATTTACACGCAAAGAACATATGGTAAACCACGTGCGCAAACATACGGGTGAGACTCCACATCGTTGcgatatttgtaaaaaatcatTTACCCGTAAGGAGCACTATGTTAATCACTATATGTGGCACACtggTCAAACTCCTCATCAATGTGAAGTGTGCGGCAAAAAGTATACACGTAAGGAACATTTAGCCAACCACATGCGTTCACATACAAATGATACACCATTTCGTTGTGAAATATGTGGCAAAAGTTTTAGTCGTAAAGAACATTTCACCAATCACATATTATGGCATACAGGAGAAACCCCTCATCGTTGCGATTTCTGTTCGAAAACGTTTACACGCAAAGAACATTTGTTGAATCATGTCCGCCAGCATACTGGCGAATCACCACATCGTTGCACATATTGTATGAAAACCTTTACACGCAAAGAACATTTGGTCAATCATATACGTCAACATACTGGTGAAACACCTTTTAAGTGCACTTATTGCACCAAAGCCTTTACGCGTAAGGATCACATGGTCAACCATGTACGACAACATACTGGCGAATCGCCACACAAGTGTACTTTCTGTACAAAAACATTTACGCGCAAAGAGCACTTAACGAATCATGTTCGCCAACATACCGGAGAGTCTCCACATCGTTGCAGCTATTGCAAGAAGACTTTCACCAGAAAGGAACATCTTACAAATCACATACGCTTGCACACTGGTGATTCACCGCACAAATGCGAGTATTGCCAGAAAACGTTCACACGGAAAGAGCATCTCAACAATCATATGCGTCAACATTCTAGTGATAATCCACACTGTTGCAATGTTTGCAACAAGCCATTTACGCGCAAAGAACATTTGATAAATCATATGTCACGTTGCCATACCGGAGATCGTCCGTTTGCTTGTGAGACTTGCGGCAAATCGTTCCCTCTTAAGGGCAATTTACTCTTCCATCAACGCAGTCATACTAAAGGACAAGAAATGGAAAGACCATTTTCGTGTGAAAAATGTCCCAAAACATTTATTTGCAAAGGTCATTTGGTATCTCATATGCGTTCCCATTCTGGTGAGAAACCACACGCATGTACTTTATGTAGTAAAGCATTTGTGGAGAGAGGTAATCTAAAGCGTCACATGAAAATGAATCACCCGAATGCACCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGTGTTGTACCccaaattaaacaagaaattaaacCAGTTATCAGTGAATTAAATCCCTTACAAACTACAACACCCACAATGCATACCATACAACAAATAACAGCTGGTGCTGCTGCAAATGCAGTACAATTAACTACAGGTTTGACGCCGTTGGTAACGTCAACCATTACATCGCATGCTGGACAAAAGCAACCAACACCACCGCAGACTCaagtacagcaacaacaacaacagcagcagcaacaacaattacagcAGCAACAAGTTGTTAATGCacatcatcaacagcagcaacaacaacagcaggtGGCAGCTCACCAACAGGCTTTacagcagcaacatcaacaaaatCAGTTATTGCAACTATCTATACAACAGGCTGCAGCAGCGGCTGCACATCAACAGCTGCAAcatcaagaacaacaacagcagcatcatcatcagcagcaacaacaacagcaacagcaagctCATCATCAACAGCAGCCAACTTCAAATGTTGCCGTTGTTGCCAATGCTCATCAGCAGTCGACACAACAACAGCCAACACAACCCCAACAGCAACCGCCACCACCACAAGTGCCAATCGCTTTGATACAATCGAATCAGGAAGCCTTGGCCCGAGCCACTATGCAACAATTACAGCATATGCCAGCTAATGTTGAACAACATCCAGTTGTATACTAA
- Protein Sequence
- MNTDNAVANATTPGESTTAASTATAVTTSNGYDPQQQHQQNRHSPLQHQQPQLNESRNILTTIAQSTATSQQYMSSPNVSGNHNAGGSLGHMSSTPVPLKHSTTAATATTSTNIVEHKHVITQSANVSNANPARISTNEDVVSSSIVLPNSTTLVSAHDQHLLHHHHHHQPQNHHQHSQQLHHQESQSSNTAPLLVSNSPNGTPSPTAVTLLANNPQNLGKYWVVTNLFQGAGGQPVPYNQEGGLAPLPPHTQTSIAGVPSSPTLARAIPTTVGSSTAVTKSEVVTSSSSAGTLHLPQQTQMLSQAALGQQLPNGTIITTQAQQQQQQQQQQQRHVTEHQQQLHVHGLSNTEDNRQQQQQQQQQQQQQLTQQQQSHVGVHQSGEPIKDEKPFSSNGKISTTNQQIIMQHISTTASSVTPTTSGATTIALGTPKTEIKEDGSVVMSGKIHPGIEMYKVNIEDLSQLFTYHEVFGKLHGDVINHPLAAAHASLPTAANNNIAAAVSATTTSSGEVNNTTGVPVVTNSVPITESTSTSSSVATGAVATTSSAATTAIATNSNAVATATTTTAGAPASGLLMPKMEGGIANVDPSTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVVPQIKQEIKPVISELNPLQTTTPTMHTIQQITAGAAANAVQLTTGLTPLVTSTITSHAGQKQPTPPQTQVQQQQQQQQQQQLQQQQVVNAHHQQQQQQQQVAAHQQALQQQHQQNQLLQLSIQQAAAAAAHQQLQHQEQQQQHHHQQQQQQQQQAHHQQQPTSNVAVVANAHQQSTQQQPTQPQQQPPPPQVPIALIQSNQEALARATMQQLQHMPANVEQHPVVY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313142;
- 90% Identity
- iTF_01313142;
- 80% Identity
- -