Sper001599.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025789.1:48447082-48447417[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 0.00022 21.5 0.0 3 35 9 42 7 44 0.88 2 2 3.6 7.3e+03 -2.6 0.1 5 13 85 93 83 95 0.77
Sequence Information
- Coding Sequence
- ATGCTCTTACACCAATACTCTCAAGAATCCCTAAAATGTGCTTTAATAGAAGTAAGAAATGGCACATCTACAATATTGGGTGCAAGTAAAAAATATGGAGTCCCGCGTTCCACCATACAGCACAAAATCCATCCTTCGGTTCATGCCAGAGAAATGGGTCCACAAGCAGTCTTGACCGAATCAGAGGAGAAATGTCTTGAGAAATGGTGCAAAGACCTAGCAAATTGTGAATTTCCATTAAAAGCTGAAGTCTTGATAACTGCAGTTCGAGCGATAATAGTAGATGATCAAAGACCCATGCTGTTTTCGTTTCCTAACAGAGCAAAACgcttttga
- Protein Sequence
- MLLHQYSQESLKCALIEVRNGTSTILGASKKYGVPRSTIQHKIHPSVHAREMGPQAVLTESEEKCLEKWCKDLANCEFPLKAEVLITAVRAIIVDDQRPMLFSFPNRAKRF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -