Sper022358.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- retn
- Assembly
- GCA_014635995.1
- Location
- CM025793.1:61973591-61993731[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-19 1.1e-15 58.4 0.0 17 89 6 76 1 76 0.93 2 2 0.46 1.8e+03 -0.0 0.6 49 74 188 218 177 228 0.69
Sequence Information
- Coding Sequence
- ATGGCAGCTACCACCTGCACACCCATCAATCGTCTACCAATTATGGCCAAATCAGTTTTGGATCTCTATGAACTGTATAATTTAGTTATTGCTCGGGGAGGACTCGTTGATGTCATTAACAAAAAGTTATGGCAGGAGATCATTAAGGGACTGCATCTACCATCGAGCATAACAAGTGCAGCCTTCACTCTTCGAACTCAatATATGAAGTATTTGTATCCGTATGAatgtgagaaaaaaaatcttagtaCACCAGCTGAATTGCAGGCTGCCATTGATGGTAATCGTCGTGAGGGTCGACGTTCCAGTTATGGTCAATATGAAGCAATGCACGGCCAAATGCAAATGccTCAGATAACACGTCAGTCACTGACCGGTGGTATACAGCAAATATCACCTTTAGCTTTGGTTACACATGCAGCTGCTGCCAATAATCAGCAGGCTCAAGCTGCAGTTGCTGCTGCAGCGGCTCATCATAGGCTAATGAAGCCCTCGTTTGTTCCAAATTTGGTCACCCAAGAAATTGAACAGCGAATGATTGAATACTTGAAATTGATTCAGGTTAAAAAGGAACAGAATGCCATCAATAATGTTTCGGGTTCTATGGGTCTATCGCCCCACCAACAACCGAATCATCAACagactcaacaacaacaacagcatcagcagcaccaacagcaacagcatcagagATCGCAAAGTCCTGAAATAAGTACAAGAGAAGCATTAAATGCCCTAGAAATGTCACGCGTAGCACTGTGGCAAATGTATCACAATAGTACCAGTCCAGCACCCTCTGTTAGTACTTCGCCACATGGTGGCGGAAATGCTCATTTCTCGACGAATCATGGTATTTCAGTCAACGAAACACAACGtagcGAAGCTTTGAACCTATCGGATTCACCTCCCAATCTCACCACAATTAAACGTGAGCGAGAACAAGAACCCAGTTCTGAAACAAATGAACGAGACGAATTTCACCACCATCAACCACCACCAACGAAACGTGCTAGTTTCTACTTACCTCCAGGAATGGGAGACGTTTCTGTAGCTGCAGGTCCAACAAATTTTCACTACAAAGGTGACCATCAGTTACATTCTGACGTTGAGGCAGACGAAGAGAACGAAGAAGATGAAGGTAACCATAATGCAACAGTTAATATTTCCAACGATGGTACAACTGTACGCCATCAATTAAACGGTGAATCAATAAGAGCACCACGCCATCATGGTAGCAGTAGCAGCGTGCATAATGATAAATCAGACGATTCAGCTATTGAAAATTCTCCATCCACATCGGCAGCATCGGCTGGCAATGGTCACATTTCACCCGTCTCTACCAAAATAATTCAATTGTCCAAACAGACCCAACAACATAACACGGCAAGTTCCAGCGGCACTTGCACTGAAAATATGACGGTGGCCGGTTCAGCTCCTTTGGGTCCATTCGAAGCATTAAAGCTGTTATCCGGAATGCAATTTCGGGTAACGCGGAATgGCACAAATGCTAATGGCGAACAAGAGTTAGCCGTTAACCTTGaattaaatggaattaaatacTCTGGTATACTTGTTGCATATTCCTCGGATCTACCGGCTTCAATGGCGACATCGTCAACTGATTCGACGGCAATAACGACATCGTCAACGGCTACCATGTCTTTAAGGGATGACAACACCTCCGGCAATAGCAAAAATGAGAACGACGGTAGTAACCGTAAAACAGGCAGAGACAGCCCCAACAACATCAACCATAATCCTATCAGTGGCGACGAAACTAATAAGGATTTAGCCGTTGTCATGAATGCAATGGAGGATGCAGACGAAATGGCAGTGCGTGCGACAAACGTAACATCaccaaatacaaatgcaaacagCATTGCAAACGGAGCCACCGGCAATGTCAGTTCCACCCTCCAAGATGCCCTAATAACATTATAG
- Protein Sequence
- MAATTCTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHGQMQMPQITRQSLTGGIQQISPLALVTHAAAANNQQAQAAVAAAAAHHRLMKPSFVPNLVTQEIEQRMIEYLKLIQVKKEQNAINNVSGSMGLSPHQQPNHQQTQQQQQHQQHQQQQHQRSQSPEISTREALNALEMSRVALWQMYHNSTSPAPSVSTSPHGGGNAHFSTNHGISVNETQRSEALNLSDSPPNLTTIKREREQEPSSETNERDEFHHHQPPPTKRASFYLPPGMGDVSVAAGPTNFHYKGDHQLHSDVEADEENEEDEGNHNATVNISNDGTTVRHQLNGESIRAPRHHGSSSSVHNDKSDDSAIENSPSTSAASAGNGHISPVSTKIIQLSKQTQQHNTASSSGTCTENMTVAGSAPLGPFEALKLLSGMQFRVTRNGTNANGEQELAVNLELNGIKYSGILVAYSSDLPASMATSSTDSTAITTSSTATMSLRDDNTSGNSKNENDGSNRKTGRDSPNNINHNPISGDETNKDLAVVMNAMEDADEMAVRATNVTSPNTNANSIANGATGNVSSTLQDALITL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -