Scar001755.1
Basic Information
- Insect
- Sarcophaga carnaria
- Gene Symbol
- -
- Assembly
- GCA_958299815.1
- Location
- OY283149.1:4189576-4194413[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1 1.1e+02 4.5 0.5 1 23 390 413 390 413 0.92 2 11 7.7 8.2e+02 1.8 0.2 2 11 420 429 419 433 0.84 3 11 2.5e-06 0.00026 22.3 1.3 1 23 475 497 475 497 0.99 4 11 0.013 1.3 10.6 1.4 1 23 505 528 505 528 0.91 5 11 3.8e-05 0.004 18.5 2.8 2 23 535 557 534 557 0.94 6 11 0.0079 0.83 11.3 0.9 1 20 596 615 596 617 0.94 7 11 0.0032 0.34 12.5 5.4 1 23 644 666 644 666 0.98 8 11 0.028 3 9.5 2.7 1 23 673 696 673 696 0.97 9 11 3.3e-05 0.0035 18.8 3.0 1 23 702 724 702 724 0.96 10 11 0.091 9.6 7.9 4.0 3 23 731 754 730 754 0.93 11 11 0.021 2.2 9.9 2.8 2 23 758 779 757 779 0.94
Sequence Information
- Coding Sequence
- ATGGATCAACTGGAACAATTGGAAGCATGTCGCATTTGTGTAACCTGTTATCCGCTACAAGAAAtggattttattaatattttccataaaaatgaaGAATTCCAACAGGAATTGGATTTCATACAGGGTGAGATACGCCAGTGGCAATTGAAAATACTACCAGATGATGGTCTGCCCCAGCGCATTTGTGCAGattgttttgccaaattttgTAGCATTGAGGCCTACCGCAAGGAATGTGTTTTGGCCCAAGAAAGACTTATCGAGACAGTAATGCAACAATCAAGCCTCAGTACAGAGAACAACTTGCAAAATGATGAAGCCAGTCAATTGAAGGCCTTAAACAACAGCCCTTTGCAATTACTAAACAATTATGAGTCGCCTAATGTTACCTTAGGCTCCGGGGCTAATGTTTTAGTGTCTTCAGTAAATTTAACACAATCGGATGTATCGCTGAATGATTTTCCTGTATTTGATCAACAATTTGCCCAATATGACAATCATCCGGCTTTAATTGATGCCTCTTCCACGTTGCTAGACAGTAGTATTATAGCACCAGAATCAGCCCAAGAATTGGGTTTCTTACCGTCACAAAACTTATTCACATTTGAGACTGCCGAACCTCCCTCAACGGGAACACTGCCATTAGTTGAGACTGATACCACGTCCATTATGAATGATATACTCGATGTACGTaccgataatgatgatgacgttgTTAATAATGGTCAGCAGAGCCTAATGAAACAAGACGATCTCGAAGACATGTTAAAGCACAGTATTATACCGACTACAACCAAACTGAGCCAgcaccagcaacaacagcaaagaacgaaaatcaatttaagccaacaggaaaaattaaatgcCACTACAATgcagaatataaaaaaggaagCTGGCCAGGGttttataaacaacaataatgttttaaaagGAGGCAGAATTGATTACCAATCAGCACCTATGCTTACGTTTTTGAATCGTGAAGATACCAACTCTGATGTTGAGTGCGATGACTCCGATATGAATGTACGCTTAAAAGGCTTATCGTATGCTTGCCATTATTGCTTTTGCCCTGAAACTGGACCCATCGATCATCTCGTCTTCCCCAATGAAGATGCCCTCTCACAGCATTTCTTCGATATACACGATCCAAATCGCCCCTATACTTGCCCTAAATGCATACAATCATATAAAACCCAATTGCTACGTGATAATCACGTAAGACTTATACATAAAATAACTGAAATACAAACGTGCAACTATTGCCAGAAACGTTTGAAGGGCTCGATTGATGTGCATCAATACAATTGCCAATATGTTGGTGATTGGGAGTGTCAACAGTGTAAAGAGAAATTCCCTAATACGCCTTTATATCGTTTTCGTTTACATCAGCGCCAGCATGAACGTACAAAGCAATTCAAGTGCCGTTTGTGTGAGCGTACATTTATGAGGAAGGCCAATTTAGAAGCCCATCAAAGGATGCACAAAGCGGAAGTACAAACAGCTCATACATGCAATCTGTGCCCGGCCAATTTTGCCGATGACTATGAGCTAAAGCGTCATAAATACCAACAACACAATGGTGAGCCTCCACTCAAATGTAAAATATGCCACAAAGGCTTTTCCTCCAACGTATTCTTACAACGTCATATGACCCAATTACATGCAGACAATTTAAAGCAcggtaacaacaataacaataacaacaacaacaacaaaaatacatctttatcatcatcatcatcctccaCGTCATCGGCACAATCAACGGAACCACAACATACCTGCTTAAATTGCAATGTTTCATTTAAATCGCTACAAAAATTACAGAATCATTTACTATTGGGTCGCGATAAGAACGGCAACTGTTTGTATAATTCGTGTAACAAACAGGAACGTCGCAAACTACAGCGTGCGGGTGTATTTCCTTGTTTTCATTGTCCTAGACGTTTCCATTTGCGTTCACAACTcgataaacatttaaatacacACGATGCACGTTTGCGACCATTCCAATGCCAACAGTGTGTGACACGTTGTCGCACAACATTCGAACTGAAACAGCACGTTAATGTTGCCCATTTAAATATAAAGGCATTCGCTTGCGATAAATGTGGTAAATGTTTTGGTTATAAAAAGGATCTAAGAGATCATATGCTTTTTCATTCAGaaaTCAATGTCCACTGCACGGAAGATGGTTGTGATTATGTGTGTAAAAATGAAAAGGCCTTAAATGATCACATAAGACATAAACATCGTCTGCTATCATGTGAATATTGCCATGAGCAATTTACCAGACAAAAACTAACCTCTCATTTACGTAATATACATCGTTCCGAAATCGATGTTGAATTAGCAGGCGAATCagataattattataaatctcaattactcaataataataatgatattaCACAAATCTCGTTTAATTTACTTAATACTCAGCAAGCAcagcaacaaacacaacaacaacaattaatcgATACTTCATTAGCAATAAATGGTGGTTGTGTATCATCATCCTGTACAACAACGCCAACATCAGCattaacaacatcatcatcatcagcattattatcatcatcatcatcaaacgTTTCATTAAATGCAAATACTAAACATTTGACAACAGCATCAATTTCTACATTGGATACAAGCACAGTTTCAACGGTTAGTTCTTTAGCATGTAGTCTAACAAATAATTGTACTTCCATTAGCACTACTAACTCAccaaataataatagtaataacgTCCATATTCTGGATGATAATGTTGATGTAGAGCATCATCAGCAAATATGCGATATGTTTGCAACAGATCCCCATGATACAAATGCCACAAGTTTAGCTTTAAATGGTTTGGTTAGCAATGAGCACGATGATTTAAGTTTACATGCTAACGATACAGCCAATATGTTTTTAGTACCCTCAACAACAACGCCTTCGGCGACAAATGATGATGATagccaccatcatcatcatcatcagttaGATCAGTATTTTATGGCTTCGTTAATTGATACTGAACAAGAGATTATAGTAACATAG
- Protein Sequence
- MDQLEQLEACRICVTCYPLQEMDFINIFHKNEEFQQELDFIQGEIRQWQLKILPDDGLPQRICADCFAKFCSIEAYRKECVLAQERLIETVMQQSSLSTENNLQNDEASQLKALNNSPLQLLNNYESPNVTLGSGANVLVSSVNLTQSDVSLNDFPVFDQQFAQYDNHPALIDASSTLLDSSIIAPESAQELGFLPSQNLFTFETAEPPSTGTLPLVETDTTSIMNDILDVRTDNDDDVVNNGQQSLMKQDDLEDMLKHSIIPTTTKLSQHQQQQQRTKINLSQQEKLNATTMQNIKKEAGQGFINNNNVLKGGRIDYQSAPMLTFLNREDTNSDVECDDSDMNVRLKGLSYACHYCFCPETGPIDHLVFPNEDALSQHFFDIHDPNRPYTCPKCIQSYKTQLLRDNHVRLIHKITEIQTCNYCQKRLKGSIDVHQYNCQYVGDWECQQCKEKFPNTPLYRFRLHQRQHERTKQFKCRLCERTFMRKANLEAHQRMHKAEVQTAHTCNLCPANFADDYELKRHKYQQHNGEPPLKCKICHKGFSSNVFLQRHMTQLHADNLKHGNNNNNNNNNNKNTSLSSSSSSTSSAQSTEPQHTCLNCNVSFKSLQKLQNHLLLGRDKNGNCLYNSCNKQERRKLQRAGVFPCFHCPRRFHLRSQLDKHLNTHDARLRPFQCQQCVTRCRTTFELKQHVNVAHLNIKAFACDKCGKCFGYKKDLRDHMLFHSEINVHCTEDGCDYVCKNEKALNDHIRHKHRLLSCEYCHEQFTRQKLTSHLRNIHRSEIDVELAGESDNYYKSQLLNNNNDITQISFNLLNTQQAQQQTQQQQLIDTSLAINGGCVSSSCTTTPTSALTTSSSSALLSSSSSNVSLNANTKHLTTASISTLDTSTVSTVSSLACSLTNNCTSISTTNSPNNNSNNVHILDDNVDVEHHQQICDMFATDPHDTNATSLALNGLVSNEHDDLSLHANDTANMFLVPSTTTPSATNDDDSHHHHHHQLDQYFMASLIDTEQEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313350;
- 90% Identity
- iTF_01315046;
- 80% Identity
- -