Basic Information

Insect: Sarcophaga carnaria
Gene Symbol: -
Assembly: GCA_958299815.1
Location: OY283152.1:111535490-111536802[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.1e-06 0.00022 22.5 3.8 1 23 217 240 217 240 0.97

2 6 8.4e-06 0.00088 20.6 3.4 1 23 248 271 248 271 0.97

3 6 1.6e-05 0.0017 19.7 1.7 1 23 277 299 277 299 0.97

4 6 4.9e-06 0.00052 21.3 0.9 1 23 308 330 308 330 0.99

5 6 0.00026 0.027 15.9 3.5 1 23 338 360 338 360 0.97

6 6 0.00044 0.046 15.2 0.4 1 23 366 389 366 389 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.1e-06	0.00022	22.5	3.8	1	23	217	240	217	240	0.97
2	6	8.4e-06	0.00088	20.6	3.4	1	23	248	271	248	271	0.97
3	6	1.6e-05	0.0017	19.7	1.7	1	23	277	299	277	299	0.97
4	6	4.9e-06	0.00052	21.3	0.9	1	23	308	330	308	330	0.99
5	6	0.00026	0.027	15.9	3.5	1	23	338	360	338	360	0.97
6	6	0.00044	0.046	15.2	0.4	1	23	366	389	366	389	0.96

Sequence Information

Coding Sequence: atGATGAATCAGAATGTGTGCCGCTGCTGTTTATATGCCAGTCCACCTTTAACATATAAAATCTTCGATGAGAATTCAAACTTAAAAGACGATTTACTGGCCTGCTTGCCGGCCACCGTGAAGTGTGAGTGCAACGATGGTTTGCCACAAATAATCTGTGATTTATGTTGGCTGCAAGTGCGTAAAATTAAAGAGTTTCGTGAACAGTGCCTGCAAGCCGATCAAGAGCTTAGGAATCGTTATGCGGAATATAAAAATCAAGCAGTAGAGGAGGTGTTGGGCTTGGTGGAACAATTAAGGCAGAAGGATAATACCGATGGTAATATATGGGCGAATAGAGAGATTTGCCATGTCTATGATGAGACAGTggatttgaataattttgaaaatacagCAGAATTCAATAGTTTTGacaCTTTGGAACTTGGTTCCGTGACTGGTGATATGGATGTTTATAATTCTTCTCACGACAGTGGCATATTCGAAGAAGACTTGCCTGTGGAAAACAGTAATGATTTGGCGGATTTGGAAGATTTTTTACCCGAGGATTCTGCAACAAAAAgacatttgaatacaaaaacttCACAAGAAGCTCCCAAATCCCCCGCAAGTGTGAAAACTAGAAAACGCAAAAACTATAAGGGACCCTTTCAATGCAGCCACTGTGATAAAAAATTCACACGTAATTTCCAGCTTAAATTACATCTGATATCAGTGCATCAAATTGGTGGCAGTTTACAATACAACTGTAAGATATGCAACAAAACCTTTGCCTCCAACCATAGCCTATCGTATCATCAGAAATCCGTGCATTATCAGCAAAAGCCTCATGTCTGCCAGCAGTGTGATAAACAATTCGTTTTAAAAACCCAACTAGTGTCACATATGCGCATACATACGGGTGAGAGTAAGCCGCGCATTTATGAGTGTGAAAAGTGTGATAAAAAGTGGCCAACACGTTCGGATCTTAAGACCCATATGCGTTCGCACAATCCCAAAATGGAGAGACCTTTTAAGTGCCAACGTTGTGAGAAAAGTTTCTTTACACGCGGCCATCTAAGCTCACACGAATTGGTGCATACCGGCGAGAAACCATTTCCCTGTGAGTTTTGTGGCCTGGCCTATCAAAGTGTAGGCAATTTAAACAATCATATGGCCCGTTGCCATATGCAGGAAATACTGAATGAGAATGAGGACTCCAAGTCTGTGGAAGAAGCCAGTGATGAGGATGTAGAGAGTGATAAATag
Protein Sequence: MMNQNVCRCCLYASPPLTYKIFDENSNLKDDLLACLPATVKCECNDGLPQIICDLCWLQVRKIKEFREQCLQADQELRNRYAEYKNQAVEEVLGLVEQLRQKDNTDGNIWANREICHVYDETVDLNNFENTAEFNSFDTLELGSVTGDMDVYNSSHDSGIFEEDLPVENSNDLADLEDFLPEDSATKRHLNTKTSQEAPKSPASVKTRKRKNYKGPFQCSHCDKKFTRNFQLKLHLISVHQIGGSLQYNCKICNKTFASNHSLSYHQKSVHYQQKPHVCQQCDKQFVLKTQLVSHMRIHTGESKPRIYECEKCDKKWPTRSDLKTHMRSHNPKMERPFKCQRCEKSFFTRGHLSSHELVHTGEKPFPCEFCGLAYQSVGNLNNHMARCHMQEILNENEDSKSVEEASDEDVESDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01313237;
90% Identity: iTF_01315812;
80% Identity: -