Scar031962.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sarcophaga carnaria
Gene Symbol
lov
Assembly
GCA_958299815.1
Location
OY283153.1:119009396-119042690[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.3e-18 1.2e-14 54.8 0.0 1 44 862 905 862 906 0.96

Sequence Information

Coding Sequence
ATGAATTGTCGAACTGATATTGCTTCAGTGAATAACCTTTTTATTACCAAAGCTTACCATATCGCAGGCGGTTCGTCTAATGGTATTGAAGGCTCCCTTGAAATCTACAAACAGTGGGAGTTACAGGAGAAaaacaacactACCATCATTATACCACCACCTGGTACACCACCCCTACCTTTAGTTCAAGCCATGGCTTTGGAAACTGAAAGTACAGAGGCTTTGGCCTTGACAACCAACAGCTCAGCAGCCTTGGCTGCAGCACCGCCCATAACCACACCAAATATGAACCACACACACAATATGCcacaaacagcagcaacaaatttACACTCACTAGCCGCGAATAGTATGATGGTCAACAGTTTATTGGCCAATAATGTGACCACAAGACCAGCTGCCTCCATACCTGACCACTATAGCCTCAGATGGAATAACCACCAGAACCATTTGATGAGAGCGTTTGATGCTTTGCTGCAAACCAAAACCCTAGTGGATGTGACATTGGTGTGTGCCGAGTCCAGCATAAGAGCCCATAAAATGGTTTTGTCAGCCTGTTCACCTTTTTTTCAAAGAGTATTTGCCGATACACCCTGTAAGCATCCGGTCATCGTACTTAAGGATTTCAAAGGCTGGGTGGTACAGGCCATCATAGATTTTATGTATCGCGGCGAAATCAGTGTGCCCCAGGAGAAGTTGCATACACTGATAGATGCCGGCGAATCACTGCAAGTGAGAGGCCTGGTAGAGAGTTCCATACCTGAGCACACGCCCACACCAGCCGCCTCACCAGATGATTTCGGTTTAATGGACACTTCCATGTTGTCTTCCGAACTTGAAAGATGTCCCAGTTTCGATGAAGAGTCACCCTCAATGGTTACAGCGGGGGGCTCCAAGATAATATTGCCTTCAAGACTTTTTGGTGCTTCCTATAGGCGTGAAAAAGAGCCACGCAAACGTGACCGGGAAAGGGAAAGAGATATGGAAGCGGACTTGGAAAGTGATCATGATTTAATGAATGACTCCTCCTCGCTCAATCACAATGATTTGTGTACCTCGCCCATGCCTAGACGGAAACAGGCAAGGCCTAGAAGACGATCAGGGGAACTGAGCCATGATATGTTACCAGCGGCCTCCTGTAAAGCCCagacaccaccaccaccaccacctgcacaaacacaagaaaatttaaatgagaatTTGGCACAGGACCTGTGCAAAGACTCTAAAATGGAGGAGAATACACCCGAAAGTATAGAAATACCGGAGGATCCCTTAAAAACTGTGATTAAATCCGAAATAGCGGACGTTATGGAGGATGAGGACGTGGAACAGGTAAACGAAAGAGACAGCGGCAATGATAGCCATGAACAGGCTGAGGATTTAATGGTCAATGACAAGTCTTTGGATAATAATTCCCACAACTCACTGAATATCCTAAACAATAACAGCCAAGACTTGTGCCAGGAGCAGCAGCATACAGTAATTCAACAAGAAGAGgatgaggaggaggaggaggaagagcAGGAGCAGGAACCTgaggaggaagaagaggaagaggATATAGAACAGCTGATACATCACACCAATGAATTGAATAGAAGACGTAAATCGGCCTTATCCATGCACTCGGAGGGCCCGGAGGATTTGTGTACAACGAAAAAAGACAACAACGACACCAGTGGCCATCATTCGGCCTCCGATAATGAGGACTCTACTAACAATAATAgctcaaaattgaataataataataacagtcgTATTGTCTTGTCTCTGAAGGATATACGGCAATTGAATAAACCCTCCTCTTCATCCAAGCCGAACCACGGAAACAACAACAGTCTGCATCCGTTTGCTAATGCTAGCCTTAGAGATCTGAGGCTGGATCGCGAAAGAGCTTTGGATACGCAATGCAAAATGGAAGTGCTAGAGGCTCAAATGCAAGCTGCTGCCGAGGCTGCAGCGGCCGCGGCCGCAAGAGGTGAAAATCCCTTTCAACATATGGAACACCAAATGGATTTGTCTTTGGCAGCGGCAGCTGCTGCCGCGGCCGTTTCACAGCAACATTCAAGGGAGCGGGATCAAGCCATGCATCGAGAACAAAGGGAATTGCAACAGCAACATAATGCCTATGCCAATAGTATATTGGGGCAAATGGGCATGCCACCAATGCCGGGACCTTTTGGACCCGGCCCCGGTACACCGGGAGGAGCGCCAACGGGTCCCTCGGCCCATGAAAGACTAGAGGAGTCGATGAACCGTTTAAGTAAAGAATTTACACCCACATCACCGATGAGCTTGCCACCGCACTACAATCCACAGGATGGACCACCACATCCGCCTTCACCGCTGCCCTTTCCCGGTATGTCTTCATTGGCGCTAACTCCGCCGCACAtgtttggtTTGGACTCACCTTTGGGCCTGTTTCCACCAGGCATAGATCCCGGGAAGCTTTATAATCCCTTAATGGAAATGTCCGATCCAAGAGGAATGCCGGGCGATGCGCCGCCATTTCTCAAAAAGAAAAtgcCCCGACCAAAAGGTCAACATTCAGCCCCTAGAGGAGGACCACCCCGCTCTTGGACAAATGCCGAATTAACTGAGGCCTTGCAACATGTGTGGAACAAGAAAATGACCACTTCACAGGCATCGCGTATCTTTGGCATTCCCTACAACTCCCTGCTAATGTATGTGCGTGGCAAATATGGCAAATCCTTGAAACTGGAACAGTTACGCAAGGATTGCATAAGTGGCCCTCCCTTGGAAATGTTGCAAATGGGCATTTCCGGCTCTAGTAAAAACTCAAGCGAAACAAAAGAACAAAGAGAAGCACGCAAAGAGGCTCAACgtaatgctgctgctgcagctgcAGCAGCTGCCGCGTCACAAAACCCGCCTAATGATATGGATATGGTGGGCCCTATGCCTGGTAATGGGCCGCGTCCAAACAGTTCCGAGCCCGATTTATTAGGTGGCCCCAATTCTCTGTTTAATCCCTTCAATCCGCAAGGCTTTTATCCCGACTTTCCAGGTGGTTTCCCGGGTTTGCCTCTCAGCATGTTAAATCTCTTGCCACCCTCGGAAAGACAACATGCCGCTGCTGCTGCAGCGGCCATGCATCATTCTATGGGCCTGGATGAGGACTGTAAATCGGATCGCTCAAAGCAATCCTCCAATATGGATGATGAATACTCTTTAAGTAGAGAAGAACGACGTCATGTGGACTTATTGAATAATTCGAATACACCATCCGTTTCGTCCCAGCAGAATGGTTCAGTGCAAGATTGA
Protein Sequence
MNCRTDIASVNNLFITKAYHIAGGSSNGIEGSLEIYKQWELQEKNNTTIIIPPPGTPPLPLVQAMALETESTEALALTTNSSAALAAAPPITTPNMNHTHNMPQTAATNLHSLAANSMMVNSLLANNVTTRPAASIPDHYSLRWNNHQNHLMRAFDALLQTKTLVDVTLVCAESSIRAHKMVLSACSPFFQRVFADTPCKHPVIVLKDFKGWVVQAIIDFMYRGEISVPQEKLHTLIDAGESLQVRGLVESSIPEHTPTPAASPDDFGLMDTSMLSSELERCPSFDEESPSMVTAGGSKIILPSRLFGASYRREKEPRKRDRERERDMEADLESDHDLMNDSSSLNHNDLCTSPMPRRKQARPRRRSGELSHDMLPAASCKAQTPPPPPPAQTQENLNENLAQDLCKDSKMEENTPESIEIPEDPLKTVIKSEIADVMEDEDVEQVNERDSGNDSHEQAEDLMVNDKSLDNNSHNSLNILNNNSQDLCQEQQHTVIQQEEDEEEEEEEQEQEPEEEEEEEDIEQLIHHTNELNRRRKSALSMHSEGPEDLCTTKKDNNDTSGHHSASDNEDSTNNNSSKLNNNNNSRIVLSLKDIRQLNKPSSSSKPNHGNNNSLHPFANASLRDLRLDRERALDTQCKMEVLEAQMQAAAEAAAAAAARGENPFQHMEHQMDLSLAAAAAAAAVSQQHSRERDQAMHREQRELQQQHNAYANSILGQMGMPPMPGPFGPGPGTPGGAPTGPSAHERLEESMNRLSKEFTPTSPMSLPPHYNPQDGPPHPPSPLPFPGMSSLALTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRGMPGDAPPFLKKKMPRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLEMLQMGISGSSKNSSETKEQREARKEAQRNAAAAAAAAAASQNPPNDMDMVGPMPGNGPRPNSSEPDLLGGPNSLFNPFNPQGFYPDFPGGFPGLPLSMLNLLPPSERQHAAAAAAAMHHSMGLDEDCKSDRSKQSSNMDDEYSLSREERRHVDLLNNSNTPSVSSQQNGSVQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00922026;
90% Identity
iTF_01315598;
80% Identity
iTF_01313913;