Scar029154.1
Basic Information
- Insect
- Sarcophaga carnaria
- Gene Symbol
- retn_1
- Assembly
- GCA_958299815.1
- Location
- OY283153.1:52720134-52742076[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.6e-21 4.1e-17 63.4 0.1 3 89 351 433 349 433 0.92 2 3 1.2 6.7e+03 -1.4 1.7 49 76 545 574 531 590 0.66 3 3 1.4 7.5e+03 -1.6 0.3 7 29 579 600 572 621 0.55
Sequence Information
- Coding Sequence
- ATGGATCGCTATATCCAAGTGCTCAAGAGAGGAAGAAGTCCGAAATCGGCTAATATTGCATCAGtttcaaaattaacaaaagaaatcGTTAAACCGCCGTCGCAAAATCGTTTTGCTTTACTGCAAGATGAGAAAGATGTCCCAACTTCTGAAACCAGGTCCTCTAAGCCACCTCCAATTTTCCTTcgtgaaaaaaatacaaacgccCTAATTAAATTAATCATTTCATTGATTGGAGAAAATTCGTTTTTCGTTTCCCCAATTAAACGAGGTAAAATTGATGAAACCAAAATCCAAGTTAGCCATGAAAACGAATACCGTAAAATCGTATCAGAgtttgaaaaacggaaaaaaaatttttatacttacCAGTTAAAAAGCGCAAAAGGCCTCCAAGTTGTGATTAAGGGTATAGACTCATATGTTGATCCCGATGAAGTAAAAGCCAGTTTGGGCGAAAAAGGCTTTAAAGTTAAAGCCGTttctaacattaaaaataaagacagAGTCCCTCAGCCTTTATTCCGCGTAGAATTAGAGCCGGGCGACATCaaccttaaaaaaaatgaaacgcaCCCAATATATGATCTGCAACTTTTTATGCATCGCAGAGTCACAGTTGAAGAACCTCATAAGCGATCTGGGCCTGTTCAGTGTTTAAACTGCCAGGAATATGGGCATACCAAAACCTACTGCAAGTTACCTTCAGTTTGTGTTGTATGCGGCGATCTCCATAACTCGTCCAAGTGCGATAAACCAAAGAACGACACCACGGTTAAGAAATGCAGCAATTGCGGAGGCAACCACACTGCCAACTATAGGGGTTGCCCTATTTTTGACGTTGTTAAACGTTCCACGGCCTACAAAACTGTATCCACCCCTGCTCAGCCAACAAAAATACCTACTCTAAGTAATCCGCCACAAGCACAAGCAGTCACCAGCCAATTTTCGTATGCCAACATTTTGAAATCTAATGAGCTAACAGCGCAAAAAGAGACACCAACTAACGAACAATCAAATTCCAACTTCAGCCGTCTAGAAGGGATGatggaaaaacttttacaaacgATGAATCACTTCATGacgaGCACACCCATCAATCGTCTGCCAATTATGGCCAAATCAGTTTTGGATCTCTATGAACTGTATAATTTAGTTATTGCTCGGGGAGGACTTGTAGATGTCATTAACAAAAAGTTATGGCAGGAGATCATTAAGGGACTGCATCTACCATCGAGCATAACAAGTGCAGCCTTCACTCTTCGAACTCAaTACATGAAGTATTTGTATCCGTATGAATGTGAGAAAAAAAACCTTAGTACACCAGCTGAATTGCAGGCTGCCATTGATGGTAATCGTCGTGAGGGTCGACGTTCCAGTTATGGTCAATATGAAGCAATGCACGGCCAAATGCAAATGccTCAGATAACGCGTCAGTCACTGACCGGTGGTATACAGCAAATATCACCGTTAGCTTTGGTTACACATGCAGCTGCTGCCAATAATCAGCAGGCTCAAGCTGCAGTTGCTGCTGCAGCAGCTCATCATAGACTAATGAAGCCCTCATTTGTTCCAAATTTGGTCACCCAAGAAATTGAGCAGCGAATGATTGAATACTTGAAATTAATTCAGGTTAAAAAGGAACAGAATGCCATTAATAATGTTTCGGGTTCTATGGGTCTATCGCCCCACCAACAACAGAATCATCAACAGCATCAACagacgcaacaacaacaacagcatcagcagcaccaccaacaacagcatcagAGATCGCAAAGTCCTGAAATAAGTACAAGAGAAGCATTAAATGCCCTCGAAATGTCACGCGTAGCACTGTGGCAAATGTATCACAATAGTACCAGTCCAGCACCCTCTGTTAGTACCTCACCACATGGTAGCGGAAATGCTAATTTTTCGACGAATCATGGTATTACACTCAACGAAACACAACGtaGCGAGGCTTTGAACCTATCGGATTCGCCACCCAATCTCACCACTATTAAACGTGAGCGAGAACGAGAACCCAGTCCTGAAACAAATGAACGAGACGAATTTCACCACCATCAACCACCACCAAACAAACGTGCCAGTTTCTATTTACCTCCTGGAATGGGAGACGTGCCTGTAGCCGCAGCTGCAACAAATTTTCACGACCATCAGATACATTCTGACGTTGATGCAGACGAAGagaacgaagaagaagaaggtaaCCATAATGCAACAGTTAATATTTCCCACGATGGTACAACTGTACGCCATCAATTAAACGGTGAGTCAGTAAGAGCACCACGCCATCATGGCAGCAGTAACAGCGTGCATAATGATAAATCAGATGATTCAGCTATTGAAAATTCTCCATCCACATCGGCAGCATCGGCTGGCAATGGTCACATTTCACCCGTCTCTACCAAGATAATTCAATTGTCCAAACAGACCGAGCAGCATAGCACGGCAAGTTCCAGCGGAACTTATGATGGAAATAAGACGGTGGTCGGTTCGCCTTCCTTGGGTCCATTCGAAGCATTCAAGCTGTTATCCGGAATGCAATTTCGGGTAACGCGGAAtggCACTAATGctaatggcgaacaagagttagCCGTTAACCTTGaattaaatggaattaaatactCTGGTATACTTGTTGCATATGCCTCGGAACTACCGGCTTCAATGGCGACATTGTCAGCTGATTCGACGGCAATAACGACGTCGTCGACGACTACCATGTCTTTAAGGGATGACAACACCTCCGGCAATAGCAAAAATGAGAACGACTGCAGTAATCGTAAAACAGGCAGAGACAGCCCCAACAACATTAACCATAATCGTATCAGTGGCGACGAAACAAATAAGGATTTAGCCGTTGTCATGAATGCAATGGAGGATGCAGACGAAATGGCAGTGCGTGATAACGTAACATCAccaaatacaaatgcaaacagTATTGCAAACGGAGCCACCGGCAATGTCAGTTCCACCCTCCAAGATGCCCTAATaacattatag
- Protein Sequence
- MDRYIQVLKRGRSPKSANIASVSKLTKEIVKPPSQNRFALLQDEKDVPTSETRSSKPPPIFLREKNTNALIKLIISLIGENSFFVSPIKRGKIDETKIQVSHENEYRKIVSEFEKRKKNFYTYQLKSAKGLQVVIKGIDSYVDPDEVKASLGEKGFKVKAVSNIKNKDRVPQPLFRVELEPGDINLKKNETHPIYDLQLFMHRRVTVEEPHKRSGPVQCLNCQEYGHTKTYCKLPSVCVVCGDLHNSSKCDKPKNDTTVKKCSNCGGNHTANYRGCPIFDVVKRSTAYKTVSTPAQPTKIPTLSNPPQAQAVTSQFSYANILKSNELTAQKETPTNEQSNSNFSRLEGMMEKLLQTMNHFMTSTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHGQMQMPQITRQSLTGGIQQISPLALVTHAAAANNQQAQAAVAAAAAHHRLMKPSFVPNLVTQEIEQRMIEYLKLIQVKKEQNAINNVSGSMGLSPHQQQNHQQHQQTQQQQQHQQHHQQQHQRSQSPEISTREALNALEMSRVALWQMYHNSTSPAPSVSTSPHGSGNANFSTNHGITLNETQRSEALNLSDSPPNLTTIKREREREPSPETNERDEFHHHQPPPNKRASFYLPPGMGDVPVAAAATNFHDHQIHSDVDADEENEEEEGNHNATVNISHDGTTVRHQLNGESVRAPRHHGSSNSVHNDKSDDSAIENSPSTSAASAGNGHISPVSTKIIQLSKQTEQHSTASSSGTYDGNKTVVGSPSLGPFEAFKLLSGMQFRVTRNGTNANGEQELAVNLELNGIKYSGILVAYASELPASMATLSADSTAITTSSTTTMSLRDDNTSGNSKNENDCSNRKTGRDSPNNINHNRISGDETNKDLAVVMNAMEDADEMAVRDNVTSPNTNANSIANGATGNVSSTLQDALITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -