Sbul001825.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- -
- Assembly
- GCA_005959815.1
- Location
- QOCX01002205.1:527-2755[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.0059 16.8 0.6 2 23 111 133 110 133 0.94 2 13 0.00096 0.053 13.8 0.2 3 23 142 163 140 163 0.96 3 13 1.1e-05 0.0006 19.9 0.1 1 23 168 190 168 190 0.98 4 13 0.00076 0.042 14.1 0.6 1 23 196 219 196 219 0.88 5 13 0.0003 0.017 15.3 1.6 1 23 225 247 225 247 0.99 6 13 3.4e-05 0.0019 18.3 3.6 3 23 255 275 254 275 0.97 7 13 0.015 0.82 10.0 6.4 1 23 387 410 387 410 0.95 8 13 2.6e-06 0.00014 21.8 0.8 1 23 417 440 417 440 0.98 9 13 0.00036 0.02 15.1 0.0 1 23 445 467 445 467 0.97 10 13 0.00024 0.013 15.6 0.5 1 23 473 496 473 496 0.90 11 13 9.7e-05 0.0054 16.9 1.6 1 23 502 524 502 524 0.99 12 13 2.8e-06 0.00015 21.7 1.4 3 23 532 552 531 552 0.97 13 13 0.0051 0.28 11.5 1.4 1 23 558 581 558 581 0.97
Sequence Information
- Coding Sequence
- AGCCCATTAACATTCAAACAATGGGATGATAAAACTTCCAAATTCATCGAAACATATGCAAGATTTCCAATACTTTACGATACGGGCCATCCGTTATTTGACAATGTTGAGGAGAAACAAAAAGCTTTAGTTGCCTTTAATCAAACCCTTTATAGTAATTGCTCTATAGAATTCAGTGTACAACAATTATCTAAAGCCATTGAACAATTAATATCTTGGTATTATAAAGCTAAACGGAGTAAAGGAAAGCCAAGTAGTTGCGAGGAAAAGTATTTAAGGAAGTGTAAAGTGTTTATGCCGTCGGAGAAATTGAAAGTGAAGCATAAAATAGTCTGTGATATATGTAATAAGAACTTTTTTacggaagaaaattttaaggttCATCAATTTAAAGCTCACAAAATAGGCGACTTACCAATTGCGTGTGATCAATGTGGCAAGAGGTTCGAATCaagatttatattaaaaattcacattCAACGTGCTCACGTTGGCAAACAATACCCTTGTGAATACTGTGGCAGATTGTTTGCCATCAAGTCAGAGTTGACCGTTCATACCCGAATACACACTGCTGAAAAGCCACATGTTTGTGAACTATGCGGCAAATCGTTTAGATTAAAAACTCAATTGGGCTATCATGTTACTGCTATACACACTAAAATTCGTGCTTTCAAATGTACCATGTGTCCAAAGGATTTCTTAAAGAAACGGGACCTCACCGATCATataaaaagtcatttaaatatAAGAGACAAAATTTGTGAAACATGCGGCAAAGGATTCTCCAATTGTCACTCCTTAATTCGCCACCGTCAAATACATTCGGAGaaaccatTAACGCTCAAACAATGGGATGACAACACTTCTAAATTCATCGATACCTACGCGAAATTTCCACTTTTATATGACGGAGAGCATCCATCATACGGTAATTTTGAGGAGAAACAAAAAGCTCAAACCGACCTTATAAATATCTTACTAACTGAGCATAATATAGATCTTAAGGATGACATCCTCACCAATGCCATAGAACAATTACAATCTTGGTATTACGATGCCAAGCAACGtaagggaaaacaaaacaaattatccaAGGATGAGACGgagtatttcaaaaaatgtaaatttttgccagaaaaacgtgtaaaaatgaaatatttttgtcacgtttgtaaaaaaaatttcaatatggaACATAATTTAAGAGGACATTTGTTTCGATTCCATAATATCGGCGATTTACCTTTTCAATGTGAGCAGTGcggaaaaaaattcgaaataaaatccACTCTTCAAATACACATTCAACGTATGCATGTCAGCAGGAAGTATCCTTGCGGGGTTTGTGGAAAACTGTTTGCCATACGATCTGAACTTAAAGTCCATAATATGGTGCACACAGCTGAAAAGCCACATGTTTGTGAATTGTGTGGCAAAgcatttcgaataaaaacccAATTGCGCTATCACGTTACCGCAATACACACTAAAATACGAGCCTACAAATGCACTATGTGTCCCAAGGATTTTCTAAAAAAGCGAGATTTGACTGATCATATTAAAACCCACTTAAATATCCGTGATAAGATATGTGAAACATGTGGTAAAGGCTTCTCAAATAGTCACTCTCTCATACGACATCGACAGATACACTCAGAAATTAAAAGATATGCCTGCAAATTGTGTGATGCGAAATTTCATCAATTTGTAGGCTTAAATGGCCATATGAAGAGAACGCATAACATTGTTAAAAAGGATTCATAA
- Protein Sequence
- SPLTFKQWDDKTSKFIETYARFPILYDTGHPLFDNVEEKQKALVAFNQTLYSNCSIEFSVQQLSKAIEQLISWYYKAKRSKGKPSSCEEKYLRKCKVFMPSEKLKVKHKIVCDICNKNFFTEENFKVHQFKAHKIGDLPIACDQCGKRFESRFILKIHIQRAHVGKQYPCEYCGRLFAIKSELTVHTRIHTAEKPHVCELCGKSFRLKTQLGYHVTAIHTKIRAFKCTMCPKDFLKKRDLTDHIKSHLNIRDKICETCGKGFSNCHSLIRHRQIHSEKPLTLKQWDDNTSKFIDTYAKFPLLYDGEHPSYGNFEEKQKAQTDLINILLTEHNIDLKDDILTNAIEQLQSWYYDAKQRKGKQNKLSKDETEYFKKCKFLPEKRVKMKYFCHVCKKNFNMEHNLRGHLFRFHNIGDLPFQCEQCGKKFEIKSTLQIHIQRMHVSRKYPCGVCGKLFAIRSELKVHNMVHTAEKPHVCELCGKAFRIKTQLRYHVTAIHTKIRAYKCTMCPKDFLKKRDLTDHIKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEIKRYACKLCDAKFHQFVGLNGHMKRTHNIVKKDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237894;
- 90% Identity
- -
- 80% Identity
- -