Sbul011467.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- -
- Assembly
- GCA_005959815.1
- Location
- QOCX01003556.1:3845-8659[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.3 4.6e+02 1.4 1.1 1 23 214 237 214 237 0.94 2 18 0.028 1.5 9.2 4.5 1 23 244 267 244 267 0.96 3 18 0.033 1.8 8.9 0.8 1 23 275 298 275 298 0.91 4 18 0.014 0.79 10.1 0.2 3 23 309 330 307 330 0.94 5 18 4.6e-05 0.0026 17.9 1.1 2 23 337 359 336 359 0.92 6 18 1.4e-05 0.0008 19.5 2.1 1 23 367 389 367 389 0.99 7 18 0.21 12 6.4 1.8 2 23 397 421 396 421 0.94 8 18 0.11 6.1 7.3 1.6 1 23 427 449 427 449 0.93 9 18 4e-06 0.00022 21.2 2.0 1 23 455 477 455 477 0.99 10 18 0.004 0.22 11.8 4.0 1 23 577 600 577 600 0.98 11 18 0.00033 0.019 15.2 0.2 1 23 607 630 607 630 0.96 12 18 0.0004 0.023 14.9 0.5 1 23 637 662 637 662 0.93 13 18 9.1e-08 5.1e-06 26.4 1.3 1 23 671 694 671 694 0.98 14 18 0.00045 0.025 14.8 3.1 2 23 712 734 711 734 0.95 15 18 0.00026 0.014 15.5 0.2 1 23 740 762 740 762 0.98 16 18 4.9e-05 0.0027 17.8 0.1 3 23 769 790 767 790 0.95 17 18 2.1e-05 0.0012 19.0 4.0 1 23 796 818 796 818 0.98 18 18 8.2e-06 0.00046 20.3 1.1 1 23 824 846 824 846 0.98
Sequence Information
- Coding Sequence
- ATGCAAGTGTGCCTGGCGAGAGCAACAGTGGGAGAGGACTGCCTTCCTTTGTATGCACCATTTTTGTGTCTTTCGTGTTTCGAGAAATGGTTGGAATTCTTAAATCTTTACCAGTTGGCTGTTAAAACtgatgaaaaaataagaagagtaTTGgagaaagaagttttaaaaactagaaataaagaaaatgacaaCAGTTTTGAAACTGTAGGCAATAAggataaaaatataaataaatattttattgataccGAAAATTTGGTAGAcataaatgaaatagaaaaatataaaacatcatCTCGATTTTTTGTAGCGAATGAGCTAAGCAGTGGAAACATCACTACCCTGTTAGCGGAAGATTGCGCACACAATAACGATAACACTGATGATGATTTAACCGTCTCTAATAGCACTTGTTCAGAAGAAGGGgagagaattaaaattatttcgtatgcCTTGGATAAAGCATGCGAAGAGGCaagtgaatttgaaaaaaaaccaactaaatCAAATTGTGAATTTAAGACAAAATACAGAACTAGAAAATCTGCTCTTGTACCTATAgaggaaagtgaaaaaaatgcGGTAACAGAAAATACAGACGAAAATGATGAGaagtttgcaaagaaaaaagttcgtTACCGGTGTGAACCGTGTAGTAAATATTTCTGGgagaagaagaaatatgaagGCCACATGAAACAAGTCCATGAGGGTGTTAAAAGACCATTCCAGTGTTCTCAATGTAATAAAGCATACAATCTTTACAAAACGCTTTTGCAACACAAAAGAGAATGTCACagtgaaaaatcaaaagaaatctttaaatgcAACCAAtgtgctaaaatatttaaaacggcAATTATTCTAAAGCAACATGTTACAAACAAGCACTCGGCAGAAAAAGAATCAATGCGCTCAATTTGTGATCAGTGCGGATTTATTGCTGCGCACCAATATTCTTTGGCAAGacatattataaacaaacacaccGAAACTGATCAAATAAAATGCGACCAGTGtcctaaagtttttaaaacgcGGTATTCACTGAAGTATCATAAACTGGGCAATCATAATCCCTCGAatataaaaccatttaaatgtgCCGAATGTCAAATGGGATTCACTCGTAAAACGTTGCTAAACCAACATAAGCGAACGCATCTGAAATATACTGAACGTATTAAATGTGATTTCGAGGGTTGCGAAGTACGTTTCGTTAAGCATGGTGATAAAACTCATCATATGCGCCTGGTACACCTGAAAGTTAAGCAACATATTTGCGATTTCTGTGGGGAGGCATTTGGTGCTATGCAAACGCTGCGACACCATCGTTTTATACATACTGGAGAAAAGCCTTATAAATGCAACATTTGTGGTCAAGGCTTTCGACAACGAACAGCAATGAAAACTCATCGAAAAACACATTTCGGAAAAGAGACAGAAAATCAGGGCGTCATAAATAATTTACCCGAAGtgaatttaaGACAATCCAGTTTCCTAATCGTGACTTTCACTTACAATTATGACGACGTTCACACAAACGAAGGAGAGAAATATATGAGCATATCAGATCTTATTAAATCAGAGCCAGATTCCGATAGTCTTTTaactgaaattgattttaatgcaAAGCCCAAACCAGATTCGAACGCTACaaagacagaaaagaaaaaacgacacTGTATTTTAAATAGTGGACGCAAAAAAGGCTTATCCAATAGATACAAATGCGATCAATGTCAGCATAAATTTGGTCACAAACTCACACTGGATGCACACATACGGAAAGTACATGAAGGACAAAAGAAAgcatttaaatgtcaaatgtGCGATAAGGCCTACTCATTTATCGGCGGGTTATCTACGCATATTCGAGATGTACACGAACGTAAGCAGGACACCTATGATTGCACTGTGCCAGGCTGTGATAAAAAGTATAGTAATTTGATTACTTTACAACGTCATGTCCGGTTTAAACACCTTAATATGGAAATTACACATCAGTATGTATGTGAACAATGTGGTGCCACATTTAAACAGAGCTCCAATCTACGGTATCACATGAAAACTCGTCATCCCACTGAAGAAGATCTTAAGCGTAAGGAGCTATTGCCTAAGGATCGCTTGGAATGCGAAGAGTGTAAAAAGTCGTTTCATTCCCAGTATACTCTCAAGTACCACAAGCTACGTGTGCATGCCGATGAGAAAAAGTTCGAATGCAAGATATGTGGTCGTCGGGTGGCCAAACAATTTATGTTGGACTCACATATGTTAGTGCATTCTGATCAAAAACTTGCTTGCAAATTCTGCGGTCGGGAATTTGTACGCAAGTATCAGGTGGAAGCACACATTAGAGCAGTGCATCAAAAGCTCAAACCCTTTCAGTGTCCGCATTGCAGCGAAAGTTTTGCATCCCGTAAGACATTGCGCCatcatatttatatacacactGGCGAAAAGCCTTATGTTTGCGATATTTGTGGACAGGCCTATCGCCAGCCGACCTGTTTGAAAAATCATCgcaaaattcacaccaaacttAGTGCAAATGATGCACCAATGACACGAACATCCAAtcgcaattttttaaataattttgtacaaaacaGTGAAGATGATACTATGGTCCATAGTGGAGAAAATTTAGTCTTAACTTAG
- Protein Sequence
- MQVCLARATVGEDCLPLYAPFLCLSCFEKWLEFLNLYQLAVKTDEKIRRVLEKEVLKTRNKENDNSFETVGNKDKNINKYFIDTENLVDINEIEKYKTSSRFFVANELSSGNITTLLAEDCAHNNDNTDDDLTVSNSTCSEEGERIKIISYALDKACEEASEFEKKPTKSNCEFKTKYRTRKSALVPIEESEKNAVTENTDENDEKFAKKKVRYRCEPCSKYFWEKKKYEGHMKQVHEGVKRPFQCSQCNKAYNLYKTLLQHKRECHSEKSKEIFKCNQCAKIFKTAIILKQHVTNKHSAEKESMRSICDQCGFIAAHQYSLARHIINKHTETDQIKCDQCPKVFKTRYSLKYHKLGNHNPSNIKPFKCAECQMGFTRKTLLNQHKRTHLKYTERIKCDFEGCEVRFVKHGDKTHHMRLVHLKVKQHICDFCGEAFGAMQTLRHHRFIHTGEKPYKCNICGQGFRQRTAMKTHRKTHFGKETENQGVINNLPEVNLRQSSFLIVTFTYNYDDVHTNEGEKYMSISDLIKSEPDSDSLLTEIDFNAKPKPDSNATKTEKKKRHCILNSGRKKGLSNRYKCDQCQHKFGHKLTLDAHIRKVHEGQKKAFKCQMCDKAYSFIGGLSTHIRDVHERKQDTYDCTVPGCDKKYSNLITLQRHVRFKHLNMEITHQYVCEQCGATFKQSSNLRYHMKTRHPTEEDLKRKELLPKDRLECEECKKSFHSQYTLKYHKLRVHADEKKFECKICGRRVAKQFMLDSHMLVHSDQKLACKFCGREFVRKYQVEAHIRAVHQKLKPFQCPHCSESFASRKTLRHHIYIHTGEKPYVCDICGQAYRQPTCLKNHRKIHTKLSANDAPMTRTSNRNFLNNFVQNSEDDTMVHSGENLVLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -