Sbul003317.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- Zfy1_1
- Assembly
- GCA_005959815.1
- Location
- QOCX01000412.1:84006-87621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.17 9.4 6.7 0.1 2 23 6 28 5 28 0.88 2 20 1 58 4.2 0.0 6 23 37 54 37 54 0.97 3 20 0.00024 0.013 15.6 0.6 1 23 60 83 60 83 0.98 4 20 0.00028 0.016 15.4 3.5 1 23 93 114 93 114 0.98 5 20 3.1 1.7e+02 2.7 1.0 13 23 128 139 121 139 0.84 6 20 1.7 93 3.6 7.7 1 19 145 163 145 167 0.93 7 20 0.053 3 8.3 0.5 2 23 176 197 175 197 0.96 8 20 7.6e-06 0.00042 20.4 2.6 3 23 204 225 203 225 0.93 9 20 0.00018 0.01 16.0 1.3 2 23 232 253 231 253 0.96 10 20 0.11 6 7.3 4.7 1 23 259 289 259 289 0.69 11 20 1.3e-05 0.00071 19.7 2.1 1 23 295 317 295 317 0.95 12 20 0.065 3.6 8.0 2.4 2 23 326 347 325 347 0.96 13 20 2.5e-05 0.0014 18.7 0.5 2 23 353 375 352 375 0.91 14 20 1.7e-06 9.5e-05 22.4 1.3 1 23 381 403 381 403 0.98 15 20 5.9e-05 0.0033 17.6 3.3 1 23 409 432 409 432 0.98 16 20 1.6e-05 0.0009 19.3 3.6 1 23 477 499 477 499 0.94 17 20 0.028 1.6 9.1 2.9 2 23 508 529 508 529 0.98 18 20 3.3e-06 0.00019 21.5 1.5 1 22 534 555 534 557 0.89 19 20 5.3e-06 0.00029 20.9 0.4 2 23 564 585 563 585 0.96 20 20 6.2e-06 0.00035 20.6 2.4 1 23 591 614 591 614 0.98
Sequence Information
- Coding Sequence
- ATGCTAATGGACTTAATATGCGATATTTGTCAAGCCAAAGTTGACACATGGAAAGCCTTAAGGGAACATTTCTTATTTGCCCATACCAAAACACCCTATATTAAATGCTGTGATATTATTTACCGTAAACCACGAGCACTTGCCGATCATCTTCAATGGCATAAAGATCCAGAAATGTTTaaatgCCAAATTTGTGATCAAAATATGTCCAGTGCACGAAATTTAACCACACATATAACAACGGAACATCCAGATAAGGCAGACATAATCGAGTTTTATGAATGTGAACATTGTTCAAAACGTGTGCGAAATTATAACTTATTAAAGCATTTACGTTCTCACAACAAGGAGAAGGAAGTTGAATGTCATATTGCAATAAAAGAGTACCATTTACAACGTCATATCGATACGTTTCATAAgggaaaaacatttcatgtctGTGACATTTGTGGTCGTAAATACAAATGTAAAGATTCATTTAAGAAACATTGTGACGAACATAAGGGCATTGTTGATCCGGCTGTTCAATGTTCAATATGTAATAAATGGCTAAAGAATCTTAACAGCTTACGTATACACCGTTTCGTACATGAGGAACATCCGAACCACTGTGGTATATGTGGAAAAACCTTCAAAACAAAACGTAGCTTAAATAGACACACAGAATACTGGCATAAACTCGATATGAATTTACACTGTAATTTTTGCGAAAAAGTATTTCGTGAAAAACGCAATCTAGACGAGCATATGGCTATACATACTGGCACTCAACTATATAATTGTCCACATTGTGGCAAAGAATCACGTTCAagatcaaatatattttGCTCCGAAACAAACCTAAATCGTCATATACAAAACTTACATAGGAATCGAAAATATCATGTTTGCGATATCTGTGGTcaaatgttcaaaaataaagaTTCATTCAAAAATCACTACGCCCAGCATCAAGATATTATTGAACCAGCCGTTCAATGTTCGATATGCCATAAatggcttaaaaacaaaaatagtctAAGATTACATCGTTTTGTTCATGAAAAACATCCAACACCCTGTGATGTGTGtggaaaaatattcgaaaccAAAAATAGTTTGCGCAGACACAAGACATACTGGCACAAATcagatttaaatttctattgtaacTTTTGTGAAAAAGTATTTCGAGAACAGCGTAACCTCCAAGAACACATGGCAACACATACCGGTGCACAGCTTTATACCTGTCCGCATTGTCAAAAGGAGTCTCGGTCGAAATCAAATATGTACGTTCATATTAAAAGACAACATCCAGCTGAGTGGTGGAAATCAAAAATGGAACGTGTGAACATTGATTTAAGTGCAGAAAACCCTCAGCTTTTATGTGCAACAATATATCGTTTGCGTAATCATATTGCGTCCGTACACAATAATATATATCACCATATTTGTGATATTTGtggaaagaaattcaaaacaaagacaTCATTTCAAAAGCACTACGACGAACACCAGGGCATTGTTGAACCACCGGCTCAGTGTACAATATGCGGTGCATGGCTAAAAAATCAACACAGTCTACGAGTGCACCATCAAACGCATGAGGACACACAATTTGCCTGTGAtatttgtggtaaatttttcaaaactaaaaagaatttaagtCGGCACAAAGGCTATTGGCATCGAAGAGAGCGAAATCTTTCATGTAGCTATTGTGATAAAGTATTTCGTGAAAAACGTAACCTCGATGAACATATGGCCATGCATACAGATACAAATTTGTATACGTGCCCACACTGTGGTAAAGAATCAAGATCGAAATCAaacatgtacgtacatataaaaaGGCAGCATCCTGACGAGTGGTGGAAATCAAAACAGAATcggtataaaattaaacccGAAGATGGAGTCGATGGAAGTAAACTGAAGGGgaagatttttgtaaataatactcCCCCAAAGTCGTCACAACAGTCTTCAATTGcggaaaaataa
- Protein Sequence
- MLMDLICDICQAKVDTWKALREHFLFAHTKTPYIKCCDIIYRKPRALADHLQWHKDPEMFKCQICDQNMSSARNLTTHITTEHPDKADIIEFYECEHCSKRVRNYNLLKHLRSHNKEKEVECHIAIKEYHLQRHIDTFHKGKTFHVCDICGRKYKCKDSFKKHCDEHKGIVDPAVQCSICNKWLKNLNSLRIHRFVHEEHPNHCGICGKTFKTKRSLNRHTEYWHKLDMNLHCNFCEKVFREKRNLDEHMAIHTGTQLYNCPHCGKESRSRSNIFCSETNLNRHIQNLHRNRKYHVCDICGQMFKNKDSFKNHYAQHQDIIEPAVQCSICHKWLKNKNSLRLHRFVHEKHPTPCDVCGKIFETKNSLRRHKTYWHKSDLNFYCNFCEKVFREQRNLQEHMATHTGAQLYTCPHCQKESRSKSNMYVHIKRQHPAEWWKSKMERVNIDLSAENPQLLCATIYRLRNHIASVHNNIYHHICDICGKKFKTKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQNRYKIKPEDGVDGSKLKGKIFVNNTPPKSSQQSSIAEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313413;
- 90% Identity
- iTF_01313413;
- 80% Identity
- iTF_01313413;