Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.7e-12 1e-08 34.5 0.0 1 38 66 104 66 109 0.89

2 3 1.5e-14 3.2e-11 42.5 0.0 2 39 121 158 120 161 0.94

3 3 7e-12 1.5e-08 33.9 0.0 1 30 175 204 175 205 0.97

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.7e-12	1e-08	34.5	1	38	66	104	66	109	0.89
2	3	1.5e-14	3.2e-11	42.5	2	39	121	158	120	161	0.94
3	3	7e-12	1.5e-08	33.9	1	30	175	204	175	205	0.97

Coding Sequence: tttctaatttttgtttttcctttttttctttcttcctatTCTATCTCAATTGCAGAGATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCCCATGATCAAAATGAACCCCATTATACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACAACCCTATGGCAAAGGGCCCATCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACTAAATCATGGAACGAAGACTCACTCAACAATGCATTGGAAGCGTTACGTTCAGGACAAATATCGGCTAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACACCAGAAGATCTGGAACGAGCCTTAGAGGCCATACGAGCTGGTCACACATCGGTACAGAAGGCAAGTGCTGAATTTGGTATACCAACAGCATTGGCCAAATGTCTATCAATCAGGCGGCTATACACTATAATCTACCCTATAGCTCTTTATATGGTCGTTTTAAGCGAGGCAAATATGATGTGA
Protein Sequence: FLIFVFPFFLSSYSISIAEMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTALAKCLSIRRLYTIIYPIALYMVVLSEANMM

Sequence clustering based on sequence similarity using MMseqs2